Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,332,418 – 11,332,529 |
Length | 111 |
Max. P | 0.546364 |
Location | 11,332,418 – 11,332,529 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.92 |
Mean single sequence MFE | -30.09 |
Consensus MFE | -22.66 |
Energy contribution | -22.66 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.14 |
Mean z-score | -1.59 |
Structure conservation index | 0.75 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.546364 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11332418 111 - 27905053 GAAAGG------GAACAGAAGUCGGGGAAAGCUGGCUAAAAAUGAAAGUUAAUGUGGUGG---AUCGGUGGAAGGGUUAAACGAAGCCAACAAGUGAACCCCAGCGUACGUGUUCCAAUU .....(------(((((..((((((......))))))..............((((((.((---.(((.(.....((((......))))....).))).))))).)))...)))))).... ( -27.70) >DroSec_CAF1 71623 114 - 1 GAAAGG------GAACAGAAGUCGGGGAUAGCUGGCCAAAAACGAAAGUUAAUGUGGUGGAUGAUCGGUGGAAGGGUUAAACGGAGCCAACAAGUGAACCCCAGCGUACGUGUUCCAAUU .....(------((((((..((.((((...(((.((((..(((....)))....))))((....((.((...........)).)).))....)))...)))).))...).)))))).... ( -31.80) >DroSim_CAF1 69838 111 - 1 GAAAGG------GAACAGAAGUCGGGGAAAGCUGGCUAAAAACGAAAGUUAAUGUGGUGG---AUCGGUGGAAGGGUUAAACGGAGCCAACAAGUGAACCCCAGCGUACGUGUUCCAAUU .....(------(((((..((((((......))))))...(((....))).((((((.((---.(((.(.....((((......))))....).))).))))).)))...)))))).... ( -30.60) >DroEre_CAF1 67110 111 - 1 GGAAGG------CAGCAGAACUCGGGGAAAGCUGGCUAAAAACGAAAGUUAAUGUGGCAC---AUCGGUGGAAGGGUUAAACGGAGCCAACAAGUGAGCCCCAGCGUACGUGUUCCAAUU ((((.(------(.((.(....)((((...(((.((((..(((....)))....))))..---.....((....((((......))))..)))))...)))).))....)).)))).... ( -31.00) >DroYak_CAF1 68874 117 - 1 GAAAGGAUGGAGAAGAAGAAGUCGGGGGCAGCUGGCUAAAAACGAAAGUUAAUGUGGCAG---AUCGGUGGAAGGGUUAAACGGAGCCAACAAGUGAACCCCAGCGUACGUGUUCCAAUU .......(((((........((.((((...(((.((((..(((....)))....))))..---.....((....((((......))))..)))))...)))).)).......)))))... ( -29.36) >consensus GAAAGG______GAACAGAAGUCGGGGAAAGCUGGCUAAAAACGAAAGUUAAUGUGGUGG___AUCGGUGGAAGGGUUAAACGGAGCCAACAAGUGAACCCCAGCGUACGUGUUCCAAUU ............((((((..((.((((...(((.((((..(((....)))....))))..........((....((((......))))..)))))...)))).))...).)))))..... (-22.66 = -22.66 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:18 2006