Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,330,880 – 11,331,040 |
Length | 160 |
Max. P | 0.999924 |
Location | 11,330,880 – 11,331,000 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.00 |
Mean single sequence MFE | -23.30 |
Consensus MFE | -20.22 |
Energy contribution | -20.26 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.52 |
Structure conservation index | 0.87 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.790325 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11330880 120 + 27905053 AAUCCCCAGCCACAACAAGGACACCAUUUUGAAUACAGUGCUGGAAUCCUUGAAUGCAAAUUGCUGCACAAUCAACGGCAAUCGACAACAAUGCAGCCGCUUGAAAAUCAUUUAAAAAAU ........(((....((((((..(((..(((....)))...)))..))))))..((((......))))........))).........(((.((....)))))................. ( -22.30) >DroSec_CAF1 70053 120 + 1 AAUCCCCAGCCACAACAAGGACACCAUUUUGAAUACAGUGCUGGAAUCCUUGAAUGCAAAUUGCUGCACAAUCAACGGCAAUCGACAACAAUGCAGCCGCUUGAAAAUCAUUUAAAAAAU ........(((....((((((..(((..(((....)))...)))..))))))..((((......))))........))).........(((.((....)))))................. ( -22.30) >DroSim_CAF1 68272 120 + 1 AAUCCCCAGCCACAACAAGGACACCAUUUUGAAUACAGUGCUGGAAUCCUCGAAUGCAAAUUGCUGCACAAUCAACGGCAAUCGACAACAAUGCAGCCGCUUGAAAAUCAUUUAAAAAAU .....(((((.((.....((...))....((....))))))))).......((.((((......))))...((((((((................)))).))))...))........... ( -19.09) >DroEre_CAF1 65616 120 + 1 AGUCCCCAGCCACAACAAGGACUCCAUGUUGAAUGCAGUGCUGGAAUCCUUGAAUGCAAAUUGCUGCACAAUCAACGGCAAUCGACAACAAUGCAGCCGCUUGAAAAUCAUUUAAAAAAU .(((....(((....((((((.(((((..((....))..).)))).))))))..((((......))))........)))....)))..(((.((....)))))................. ( -27.60) >DroYak_CAF1 67316 120 + 1 AAUCCACAGCCACAACAAGGACUCCAUUUUGAAUGCAGUGCUGGAAUCCUUGAAUGCAAAUUGCUGCACAAUCAACGACAAUUGACAACAAUGCAGCCGCUUGAAAAUCAUUUAAAAAAU ....((.(((.....((((((.((((..(((....)))...)))).))))))..........((((((...((((......))))......)))))).)))))................. ( -25.20) >consensus AAUCCCCAGCCACAACAAGGACACCAUUUUGAAUACAGUGCUGGAAUCCUUGAAUGCAAAUUGCUGCACAAUCAACGGCAAUCGACAACAAUGCAGCCGCUUGAAAAUCAUUUAAAAAAU .......(((.....((((((..(((..(((....)))...)))..))))))..........((((((.......((.....)).......)))))).)))................... (-20.22 = -20.26 + 0.04)
Location | 11,330,880 – 11,331,000 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.00 |
Mean single sequence MFE | -37.96 |
Consensus MFE | -36.12 |
Energy contribution | -36.00 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.06 |
Mean z-score | -2.89 |
Structure conservation index | 0.95 |
SVM decision value | 4.58 |
SVM RNA-class probability | 0.999924 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11330880 120 - 27905053 AUUUUUUAAAUGAUUUUCAAGCGGCUGCAUUGUUGUCGAUUGCCGUUGAUUGUGCAGCAAUUUGCAUUCAAGGAUUCCAGCACUGUAUUCAAAAUGGUGUCCUUGUUGUGGCUGGGGAUU ...........((((..((.((.(((((((....((((((....)))))).))))))).....(((..(((((((.(((....((....))...))).))))))).))).))))..)))) ( -37.60) >DroSec_CAF1 70053 120 - 1 AUUUUUUAAAUGAUUUUCAAGCGGCUGCAUUGUUGUCGAUUGCCGUUGAUUGUGCAGCAAUUUGCAUUCAAGGAUUCCAGCACUGUAUUCAAAAUGGUGUCCUUGUUGUGGCUGGGGAUU ...........((((..((.((.(((((((....((((((....)))))).))))))).....(((..(((((((.(((....((....))...))).))))))).))).))))..)))) ( -37.60) >DroSim_CAF1 68272 120 - 1 AUUUUUUAAAUGAUUUUCAAGCGGCUGCAUUGUUGUCGAUUGCCGUUGAUUGUGCAGCAAUUUGCAUUCGAGGAUUCCAGCACUGUAUUCAAAAUGGUGUCCUUGUUGUGGCUGGGGAUU ...........((((..((.((.(((((((....((((((....)))))).))))))).....(((..(((((((.(((....((....))...))).))))))).))).))))..)))) ( -37.30) >DroEre_CAF1 65616 120 - 1 AUUUUUUAAAUGAUUUUCAAGCGGCUGCAUUGUUGUCGAUUGCCGUUGAUUGUGCAGCAAUUUGCAUUCAAGGAUUCCAGCACUGCAUUCAACAUGGAGUCCUUGUUGUGGCUGGGGACU .............((..((.((.(((((((....((((((....)))))).))))))).....(((..(((((((((((...............))))))))))).))).))))..)).. ( -39.06) >DroYak_CAF1 67316 120 - 1 AUUUUUUAAAUGAUUUUCAAGCGGCUGCAUUGUUGUCAAUUGUCGUUGAUUGUGCAGCAAUUUGCAUUCAAGGAUUCCAGCACUGCAUUCAAAAUGGAGUCCUUGUUGUGGCUGUGGAUU ...............(((((((.(((((((....((((((....)))))).))))))).....(((..(((((((((((...............))))))))))).))).))).)))).. ( -38.26) >consensus AUUUUUUAAAUGAUUUUCAAGCGGCUGCAUUGUUGUCGAUUGCCGUUGAUUGUGCAGCAAUUUGCAUUCAAGGAUUCCAGCACUGUAUUCAAAAUGGUGUCCUUGUUGUGGCUGGGGAUU ...........((((..((.((.(((((((....((((((....)))))).))))))).....(((..(((((((.(((....((....))...))).))))))).))).))))..)))) (-36.12 = -36.00 + -0.12)
Location | 11,330,920 – 11,331,040 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.42 |
Mean single sequence MFE | -33.98 |
Consensus MFE | -32.06 |
Energy contribution | -32.34 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.05 |
Mean z-score | -1.25 |
Structure conservation index | 0.94 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.801749 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11330920 120 - 27905053 CUUCAUUUGUGUCACUCCGCGUGGCAGCGAAGUUUAAGGGAUUUUUUAAAUGAUUUUCAAGCGGCUGCAUUGUUGUCGAUUGCCGUUGAUUGUGCAGCAAUUUGCAUUCAAGGAUUCCAG .....((((((((((.....)))))).))))......(((((((((..((((.....((((..(((((((....((((((....)))))).)))))))..)))))))).))))))))).. ( -33.70) >DroSec_CAF1 70093 120 - 1 CUUCAUUUGUGUCACUCCGCGUGGCAGCGAAGUUUAAGGGAUUUUUUAAAUGAUUUUCAAGCGGCUGCAUUGUUGUCGAUUGCCGUUGAUUGUGCAGCAAUUUGCAUUCAAGGAUUCCAG .....((((((((((.....)))))).))))......(((((((((..((((.....((((..(((((((....((((((....)))))).)))))))..)))))))).))))))))).. ( -33.70) >DroSim_CAF1 68312 120 - 1 CUUCAUUUGUGUCACUCCGCGUGGCAGCGAAGUUUAAGGGAUUUUUUAAAUGAUUUUCAAGCGGCUGCAUUGUUGUCGAUUGCCGUUGAUUGUGCAGCAAUUUGCAUUCGAGGAUUCCAG (((..((((((((((.....)))))).))))....)))(((.((((..((((.....((((..(((((((....((((((....)))))).)))))))..))))))))..)))).))).. ( -34.80) >DroEre_CAF1 65656 119 - 1 CUUCAUUUGUGUCACUC-CCGCGGCAGCGACGUUGAAGGGAUUUUUUAAAUGAUUUUCAAGCGGCUGCAUUGUUGUCGAUUGCCGUUGAUUGUGCAGCAAUUUGCAUUCAAGGAUUCCAG (((((....((((.(((-(...)).)).)))).)))))(((.(((((.((((.....((((..(((((((....((((((....)))))).)))))))..)))))))).))))).))).. ( -33.80) >DroYak_CAF1 67356 120 - 1 CUUCAUUUGUGUCACUCUCCGUGGCAGCGAUGUUAAAGGGAUUUUUUAAAUGAUUUUCAAGCGGCUGCAUUGUUGUCAAUUGUCGUUGAUUGUGCAGCAAUUUGCAUUCAAGGAUUCCAG ...((((..((((((.....))))))..)))).....(((((((((..((((.....((((..(((((((....((((((....)))))).)))))))..)))))))).))))))))).. ( -33.90) >consensus CUUCAUUUGUGUCACUCCGCGUGGCAGCGAAGUUUAAGGGAUUUUUUAAAUGAUUUUCAAGCGGCUGCAUUGUUGUCGAUUGCCGUUGAUUGUGCAGCAAUUUGCAUUCAAGGAUUCCAG (((..((((((((((.....)))))).))))....)))(((.(((((.((((.....((((..(((((((....((((((....)))))).)))))))..)))))))).))))).))).. (-32.06 = -32.34 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:09 2006