Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,545,370 – 1,545,469 |
Length | 99 |
Max. P | 0.715148 |
Location | 1,545,370 – 1,545,469 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 79.26 |
Mean single sequence MFE | -32.53 |
Consensus MFE | -23.35 |
Energy contribution | -23.92 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.30 |
Mean z-score | -1.31 |
Structure conservation index | 0.72 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.715098 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1545370 99 + 27905053 ------------UCUGGACCACGGACCCAAGGGGUUAACGAUUAAAUGGUCGUCAAGCGGUCAUUCCAGGGGUCAGUUUGGCACGCUUCCGCUUU-GGUAACUGACCUAU----UU ------------.(((((...(((((((...)))))..)).....(((..((.....))..))))))))(((((((((.(((........)))..-...)))))))))..----.. ( -33.50) >DroSec_CAF1 46911 103 + 1 ------------UCUGGACCACGGACCCAAGGGGUUAACGAUUAAAUGGUCGUCAAGCGGUCAUUCCAGGGGUCAGUUUGGCACGCUUCCGCUUU-GGUAACUGACCUAUUAAUUU ------------.(((((...(((((((...)))))..)).....(((..((.....))..))))))))(((((((((.(((........)))..-...)))))))))........ ( -33.50) >DroSim_CAF1 47550 103 + 1 ------------UCUGGACCACGGACCCAAGGGGUUAACGAUUAAAUGGUUGUCAAGCGGUCAUUCCAGGGGUCAGUUUGGCACGCUUCCGCUUU-GGUAACUGACCUAUUAAUUU ------------.(((((...(((((((...)))))..)).....(((..((.....))..))))))))(((((((((.(((........)))..-...)))))))))........ ( -30.50) >DroEre_CAF1 46256 100 + 1 ------------UCUGGA---CGUACCGAAGGGGUUAACGAUUAAGUGGUCGUCAAACGGUCAUUCCAGGGGUCAGUUUGGCACGCGUCCUCCUU-AGUAACUGACCUAUCAAUUU ------------.(((((---(((.((....))....))).....(((..((.....))..))))))))(((((((((.(((....)))......-...)))))))))........ ( -30.50) >DroYak_CAF1 42316 95 + 1 ------------UCUGGA---CGUACCCAAGGGGUUAACGAUUAAAUGGUCUUCAAAAGGUCAUUCCAGGGGUCAGUUUGGCACACGUCCUCGUU-GGUAAGUGACCUAU-----U ------------.(((((---(((((((...))))..))).....(((..((.....))..))))))))((((((.((((.((.(((....))))-).))))))))))..-----. ( -29.90) >DroAna_CAF1 44787 107 + 1 UGCUGGACAUGUGCUGGACCAUGG----AAAGGGUAAAUGAUUAAAGGGUUGUCAAACGGUCAGUCCAGGGGUCAGC-UGGCGCGUG-CCGUUCUGGGACACUGACCC---CAUUU ...(((((.((.((((.(((.(..----..).)))...((((.........))))..)))))))))))((((((((.-.(((....)-))(((....))).)))))))---).... ( -37.30) >consensus ____________UCUGGACCACGGACCCAAGGGGUUAACGAUUAAAUGGUCGUCAAACGGUCAUUCCAGGGGUCAGUUUGGCACGCGUCCGCUUU_GGUAACUGACCUAU_AAUUU .............(((((...((.(((.....)))...)).....(((..((.....))..))))))))(((((((((.(((........)))......)))))))))........ (-23.35 = -23.92 + 0.56)
Location | 1,545,370 – 1,545,469 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 79.26 |
Mean single sequence MFE | -30.52 |
Consensus MFE | -17.36 |
Energy contribution | -19.87 |
Covariance contribution | 2.50 |
Combinations/Pair | 1.14 |
Mean z-score | -1.90 |
Structure conservation index | 0.57 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.715148 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1545370 99 - 27905053 AA----AUAGGUCAGUUACC-AAAGCGGAAGCGUGCCAAACUGACCCCUGGAAUGACCGCUUGACGACCAUUUAAUCGUUAACCCCUUGGGUCCGUGGUCCAGA------------ ..----...((((((((...-...((....))......)))))))).(((((....((((.((((((........))))))((((...))))..))))))))).------------ ( -35.50) >DroSec_CAF1 46911 103 - 1 AAAUUAAUAGGUCAGUUACC-AAAGCGGAAGCGUGCCAAACUGACCCCUGGAAUGACCGCUUGACGACCAUUUAAUCGUUAACCCCUUGGGUCCGUGGUCCAGA------------ .........((((((((...-...((....))......)))))))).(((((....((((.((((((........))))))((((...))))..))))))))).------------ ( -35.50) >DroSim_CAF1 47550 103 - 1 AAAUUAAUAGGUCAGUUACC-AAAGCGGAAGCGUGCCAAACUGACCCCUGGAAUGACCGCUUGACAACCAUUUAAUCGUUAACCCCUUGGGUCCGUGGUCCAGA------------ .........((((((((...-...((....))......)))))))).(((((....((((.((((............))))((((...))))..))))))))).------------ ( -31.00) >DroEre_CAF1 46256 100 - 1 AAAUUGAUAGGUCAGUUACU-AAGGAGGACGCGUGCCAAACUGACCCCUGGAAUGACCGUUUGACGACCACUUAAUCGUUAACCCCUUCGGUACG---UCCAGA------------ .........((((((((...-.(.(......).)....)))))))).(((((...((((.(((((((........)))))))......))))...---))))).------------ ( -28.50) >DroYak_CAF1 42316 95 - 1 A-----AUAGGUCACUUACC-AACGAGGACGUGUGCCAAACUGACCCCUGGAAUGACCUUUUGAAGACCAUUUAAUCGUUAACCCCUUGGGUACG---UCCAGA------------ .-----...(((.....)))-.....((((((((.....))..((((..((..((((...(((((.....)))))..))))...))..)))))))---)))...------------ ( -22.20) >DroAna_CAF1 44787 107 - 1 AAAUG---GGGUCAGUGUCCCAGAACGG-CACGCGCCA-GCUGACCCCUGGACUGACCGUUUGACAACCCUUUAAUCAUUUACCCUUU----CCAUGGUCCAGCACAUGUCCAGCA ....(---((((((((((......))((-(....))).-)))))))))(((((.((((((............................----..))))))........)))))... ( -30.41) >consensus AAAUU_AUAGGUCAGUUACC_AAAGCGGAAGCGUGCCAAACUGACCCCUGGAAUGACCGCUUGACGACCAUUUAAUCGUUAACCCCUUGGGUCCGUGGUCCAGA____________ .........((((((((.......(((....)))....)))))))).(((((....((((.((((((........))))))(((.....)))..)))))))))............. (-17.36 = -19.87 + 2.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:43 2006