Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,329,969 – 11,330,084 |
Length | 115 |
Max. P | 0.986514 |
Location | 11,329,969 – 11,330,084 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.56 |
Mean single sequence MFE | -23.91 |
Consensus MFE | -22.02 |
Energy contribution | -22.38 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.03 |
Mean z-score | -1.70 |
Structure conservation index | 0.92 |
SVM decision value | 2.04 |
SVM RNA-class probability | 0.986514 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11329969 115 - 27905053 AUUGCAUCGCUGAAGUUUUGCGCAAAAGUUAAUAAAAUUAUUUGCCACAGACUUUGAUAAAUAUGAAACAGGACUCUGGCAAAUGGCAAAUAAAUACAGGAACGCCAAACUGAAA----- .((((......(((((((((.(((((((((.....)))).))))))).))))))).............(((....))))))).((((................))))........----- ( -19.29) >DroSec_CAF1 69117 115 - 1 AUUGCAUCGCUGAAGUUUUGCGCAAAAGUUAAUAAAAUUAUUUGCCACAGACUUUGAUAAAUAUGAAACAGGUCUCUGGCAAAUGGCAAAUAAAUACAGGAACGGCAAACUGAAA----- .((((.((.(((....(((((((....)).........(((((((((.((((((...............)))))).))))))))))))))......)))))...)))).......----- ( -26.16) >DroSim_CAF1 67333 115 - 1 AUUGCAUCGCUGAAGUUUUGCGCAAAAGUUAAUAAAAUUAUUUGCCACAGACUUUGAUAAAUAUGAAACAGGUCUCUGGCAAAUGGCGAAUAAAUACAGGAACGGCAAACUGAAA----- .((((.((.(((..((((..(((...((((.....))))((((((((.((((((...............)))))).)))))))).)))...)))).)))))...)))).......----- ( -25.86) >DroEre_CAF1 64671 119 - 1 AUUGCAUCGCUGAAGUUUUGCGCAAAAGUUAAUAAAAUUAUUUGCCACAGACUUUGAUAAAUAUGAAACAGGUC-CUGGCAAAUGGCGAAUAAAUACAGAAACGGCAAGCUGAAACAGAA .((((....(((..((((..(((...((((.....))))((((((((..(((((...............)))))-.)))))))).)))...)))).))).....))))............ ( -22.16) >DroYak_CAF1 66434 115 - 1 AUUGCAUCGCUGAAGUUUUGCGCAAAAGUUAAUAAAAUUAUUUGCCACAGACUUUGAUAAAUAUGAAACAGGUCUCUGGCAAAUGGCGAAUAAAUACAGAAACUGCAAACUGAAA----- .(((((...(((..((((..(((...((((.....))))((((((((.((((((...............)))))).)))))))).)))...)))).)))....))))).......----- ( -26.06) >consensus AUUGCAUCGCUGAAGUUUUGCGCAAAAGUUAAUAAAAUUAUUUGCCACAGACUUUGAUAAAUAUGAAACAGGUCUCUGGCAAAUGGCGAAUAAAUACAGGAACGGCAAACUGAAA_____ .((((....(((....(((((((....)).........(((((((((.((((((...............)))))).))))))))))))))......))).....))))............ (-22.02 = -22.38 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:06 2006