Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,329,299 – 11,329,417 |
Length | 118 |
Max. P | 0.999095 |
Location | 11,329,299 – 11,329,417 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.86 |
Mean single sequence MFE | -23.08 |
Consensus MFE | -21.26 |
Energy contribution | -21.54 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.08 |
Mean z-score | -2.38 |
Structure conservation index | 0.92 |
SVM decision value | 3.37 |
SVM RNA-class probability | 0.999095 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11329299 118 + 27905053 GAGAACAAACAUAACGACAAUUUCACGCUACAAAUGUUUCGAUUAAAAAUUUCCUUUUUUU--UUUUUUGCCCAUGUCGUUAUGGGGUUGCCAAUACUCGUAAAGCAACCACACCCCCAU .........((((((((((......((..((....))..))..((((((............--.))))))....)))))))))).((((((.............)))))).......... ( -22.74) >DroSec_CAF1 68452 112 + 1 GAGAACAAACAUGACGACAAUUUCACGCUACAAAUGUUUCGAUUAAAAAUUUCCC--U-----UUUUUUGCCAAUGUCGUUAUGGGGUUGCCAAUACUCGUAAAGCAACCACACC-CCAU .........((((((((((......((..((....))..))..((((((......--.-----.))))))....)))))))))).((((((.............)))))).....-.... ( -24.02) >DroSim_CAF1 66648 114 + 1 GAGAACAAACAUAACGACAAUUUCACGCUACAAAUGUUUCGAUUAAAAAUUUCCCCUU-----UUUUUUGCCAAUGUCGUUAUGGGGUUGCCAAUACUCGUAAAGCAACCACACC-CCAU .........((((((((((......((..((....))..))..((((((.........-----.))))))....)))))))))).((((((.............)))))).....-.... ( -23.02) >DroEre_CAF1 64032 105 + 1 AAGAACAAACAUAACGACAAUUUCACGCUACAAAUGUUUCGAUUAAAAAUAUCAUUUU--------UUUGCCAAUGUCGUUCUGGGGUUGCCAAU------AAAGCAGCCACACC-CAAU .........((.(((((((......((..((....))..))..((((((.......))--------))))....))))))).)).((((((....------...)))))).....-.... ( -20.40) >DroYak_CAF1 65793 113 + 1 GAGAACAAACAUAACGACAAUUUCACGCUACAAAUGUUUCGAUUAAAAAUCUCCUUUUUUUUAUUUUUUGCCAAUGUCGUUAUGGGGUUGCCAAU------AAAGCAACCACACC-CCAU .........((((((((((......((..((....))..))..((((((........))))))...........)))))))))).((((((....------...)))))).....-.... ( -25.20) >consensus GAGAACAAACAUAACGACAAUUUCACGCUACAAAUGUUUCGAUUAAAAAUUUCCUUUU_____UUUUUUGCCAAUGUCGUUAUGGGGUUGCCAAUACUCGUAAAGCAACCACACC_CCAU .........((((((((((......((..((....))..))..((((((...............))))))....)))))))))).((((((.............)))))).......... (-21.26 = -21.54 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:05 2006