Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,327,969 – 11,328,165 |
Length | 196 |
Max. P | 0.997328 |
Location | 11,327,969 – 11,328,089 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.32 |
Mean single sequence MFE | -25.34 |
Consensus MFE | -20.84 |
Energy contribution | -21.76 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.12 |
Mean z-score | -2.76 |
Structure conservation index | 0.82 |
SVM decision value | 2.84 |
SVM RNA-class probability | 0.997328 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11327969 120 - 27905053 CUACGGCCAACUAAGACAUAACUCAUCCGCUCAGCCCAUUAAAGCGUAUUCCAUAAAAUAUGCAUAAGGUAAUGGGCAGCGCCCCUUCCCAAUUAUUACAAGAUCAUAACUCAUGUCACA ..............(((((........((((..((((((((..(((((((......)))))))......))))))))))))....................((.......)))))))... ( -25.40) >DroSec_CAF1 67124 110 - 1 CUAUGGCCAACUAAGACAUAACUCAUCCGCUCAGCCCAUUAAAGCGUAUACUAUA-----CGUA-----UAAUGGGCAGCGCCCCUUCCCAAUUAUUACAAGAUCAUAACUCAUGUCACA ..............(((((........((((..((((((((..((((((...)))-----))).-----))))))))))))....................((.......)))))))... ( -24.40) >DroSim_CAF1 65294 120 - 1 CUAUGGCCAACUAAGACAUAACUCAUCCGCUCAGCCCAUUAAUGCGUAUACCAUAAAAUAUGCAUAAGGUAAUGGGCAGCGCCCCUUCCCAAUUAUUACAAGAUCAUAACUCAUGUCACA ..............(((((........((((..((((((((((((((((........))))))))....))))))))))))....................((.......)))))))... ( -27.10) >DroEre_CAF1 62587 118 - 1 CUAUGACCAACUAAGACAUAACUCAUCCGCUCAGCCCAUUAAAGCGUAUUCCAUAAAAUAUGCACGAGGUAGUGGGGAGCGCCCCUUCCCAAUUAUUACAAGAUCAUAACUCAUGUC--G ..............(((((........(((((..(((((((..(((((((......)))))))......))))))))))))....................((.......)))))))--. ( -24.90) >DroYak_CAF1 64427 118 - 1 CUAUGACCAACUAAGACAUAACUCAUCCGCUCAGCCCAUUAAAGCGUAUUCCAUAAAAUAUGCAUAAGGUAAUGGGGAGCGCCCCUUCCCAAUUAUUACAAGAUCAUAACUCAUGUC--A ..............(((((........(((((..(((((((..(((((((......)))))))......))))))))))))....................((.......)))))))--. ( -24.90) >consensus CUAUGGCCAACUAAGACAUAACUCAUCCGCUCAGCCCAUUAAAGCGUAUUCCAUAAAAUAUGCAUAAGGUAAUGGGCAGCGCCCCUUCCCAAUUAUUACAAGAUCAUAACUCAUGUCACA ..............(((((........((((..((((((((..(((((((......)))))))......))))))))))))....................((.......)))))))... (-20.84 = -21.76 + 0.92)
Location | 11,328,009 – 11,328,126 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.96 |
Mean single sequence MFE | -23.73 |
Consensus MFE | -15.60 |
Energy contribution | -16.72 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.11 |
Mean z-score | -1.75 |
Structure conservation index | 0.66 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.554358 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11328009 117 - 27905053 GGAACUCU---CCACACAACGUUAACCUAAUUAGUACAAACUACGGCCAACUAAGACAUAACUCAUCCGCUCAGCCCAUUAAAGCGUAUUCCAUAAAAUAUGCAUAAGGUAAUGGGCAGC (((....)---)).......((((......(((((.....(....)...)))))....))))......(((..((((((((..(((((((......)))))))......))))))))))) ( -23.90) >DroSec_CAF1 67164 110 - 1 GGGACUCUCCUCCACACAACGUUAACCUAAUUAGUCCAAACUAUGGCCAACUAAGACAUAACUCAUCCGCUCAGCCCAUUAAAGCGUAUACUAUA-----CGUA-----UAAUGGGCAGC .(((......))).......((((......((((((((.....)))...)))))....))))......(((..((((((((..((((((...)))-----))).-----))))))))))) ( -24.50) >DroSim_CAF1 65334 120 - 1 GGGACUCUCCUCCACACGACGUUAACCUAAUUAGUCCAAACUAUGGCCAACUAAGACAUAACUCAUCCGCUCAGCCCAUUAAUGCGUAUACCAUAAAAUAUGCAUAAGGUAAUGGGCAGC .(((......)))....((.((((......((((((((.....)))...)))))....))))))....(((..((((((((((((((((........))))))))....))))))))))) ( -28.40) >DroEre_CAF1 62625 106 - 1 --------------CCCAACGUUAACCUAAUUAGUCCAAACUAUGACCAACUAAGACAUAACUCAUCCGCUCAGCCCAUUAAAGCGUAUUCCAUAAAAUAUGCACGAGGUAGUGGGGAGC --------------......((((......(((((..............)))))....))))......((((..(((((((..(((((((......)))))))......))))))))))) ( -19.74) >DroYak_CAF1 64465 117 - 1 GAGCCGCU---UCACCUAACGCUAACCUAAUUAGUCCGAACUAUGACCAACUAAGACAUAACUCAUCCGCUCAGCCCAUUAAAGCGUAUUCCAUAAAAUAUGCAUAAGGUAAUGGGGAGC ((((....---.........(((((.....)))))..((..((((...........))))..))....))))..(((((((..(((((((......)))))))......))))))).... ( -22.10) >consensus GGGACUCU___CCACACAACGUUAACCUAAUUAGUCCAAACUAUGGCCAACUAAGACAUAACUCAUCCGCUCAGCCCAUUAAAGCGUAUUCCAUAAAAUAUGCAUAAGGUAAUGGGCAGC ....................((((......(((((..............)))))....))))......(((..((((((((..(((((((......)))))))......))))))))))) (-15.60 = -16.72 + 1.12)
Location | 11,328,049 – 11,328,165 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.44 |
Mean single sequence MFE | -38.58 |
Consensus MFE | -21.45 |
Energy contribution | -22.37 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.16 |
Mean z-score | -3.04 |
Structure conservation index | 0.56 |
SVM decision value | 1.63 |
SVM RNA-class probability | 0.968888 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11328049 116 + 27905053 AAUGGGCUGAGCGGAUGAGUUAUGUCUUAGUUGGCCGUAGUUUGUACUAAUUAGGUUAACGUUGUGUGG---AGAGUUCCC-UUCAAGCCUACUUGCAACUUAAAAGUUGUAGGAAAGUU ..(((((((((.(((....(((..(....(((((((.((((....))))....)))))))...)..)))---.....))).-))).))))))(((((((((....)))))))))...... ( -36.10) >DroSec_CAF1 67194 120 + 1 AAUGGGCUGAGCGGAUGAGUUAUGUCUUAGUUGGCCAUAGUUUGGACUAAUUAGGUUAACGUUGUGUGGAGGAGAGUCCCGUUUCAAGCCUACUUGCAACUUAAAAGUUGUAGGGAAGUU ..(((((((((((.....((((...((((((((((((.....))).))))))))).)))).......(((......))))))))..))))))(((((((((....)))))))))...... ( -38.30) >DroSim_CAF1 65374 120 + 1 AAUGGGCUGAGCGGAUGAGUUAUGUCUUAGUUGGCCAUAGUUUGGACUAAUUAGGUUAACGUCGUGUGGAGGAGAGUCCCGUUUUAAGCCUACUUGCAACUUAAAAGUUGUAGGGAAGUU ..(((((((((((.((((((((...((((((((((((.....))).))))))))).)))).))))..(((......))))))))..))))))(((((((((....)))))))))...... ( -40.50) >DroEre_CAF1 62665 102 + 1 AAUGGGCUGAGCGGAUGAGUUAUGUCUUAGUUGGUCAUAGUUUGGACUAAUUAGGUUAACGUUGGG------------------CCAGCCUACUUCCUCCAGAUAAUUCGUAGGGAAGCU ..(((((((.((......((((...(((((((((((........))))))))))).)))).....)------------------))))))))((((((...((....))...)))))).. ( -36.00) >DroYak_CAF1 64505 117 + 1 AAUGGGCUGAGCGGAUGAGUUAUGUCUUAGUUGGUCAUAGUUCGGACUAAUUAGGUUAGCGUUAGGUGA---AGCGGCUCAUUUCCAGCCUACUUCCUCCGGAAAAUACGUAGGGAGGUU ..(((((((.(.((((((((.....(((((((((((........)))))))))))....((((......---))))))))))))))))))))((((((.((.......)).))))))... ( -42.00) >consensus AAUGGGCUGAGCGGAUGAGUUAUGUCUUAGUUGGCCAUAGUUUGGACUAAUUAGGUUAACGUUGUGUGG___AGAGUCCCGUUUCAAGCCUACUUGCAACUUAAAAGUUGUAGGGAAGUU ..((((((..........((((...((((((((((((.....))).))))))))).))))....((..................))))))))((((((((......))))))))...... (-21.45 = -22.37 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:00 2006