Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,327,646 – 11,327,805 |
Length | 159 |
Max. P | 0.892519 |
Location | 11,327,646 – 11,327,766 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.33 |
Mean single sequence MFE | -32.96 |
Consensus MFE | -30.92 |
Energy contribution | -30.88 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.13 |
Structure conservation index | 0.94 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.595760 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11327646 120 + 27905053 UCGCCCUUUCAUGUCAAGGUAGCAUAAUUUUCGGGCAUUUAACCUGGCCAACCCGGAAGCAUUUGGCUUAAAUGUCUGGUCAUUUGUAAAUAGUUCGUGUCGCAGCCGCAGACGCAACAC ..((((((.......))))..))((((...(((((((((((....((((((..(....)...)))))))))))))))))....)))).....(((.(((((((....)).)))))))).. ( -33.00) >DroSec_CAF1 66806 115 + 1 -----CUUUCAUGUUAAGGUAGCAUAAUUUUCGGGCAUUUAACCUGGCCAACCCGGAAGCAUUUGGCUUAAAUGUCUGGUCAUUUGUAAAUAGUUCGUGUCGCAGCCGCAGACGCAACAC -----......((((......(((.(((..(((((((((((....((((((..(....)...)))))))))))))))))..)))))).........(((((((....)).))))))))). ( -31.40) >DroSim_CAF1 64971 120 + 1 UCGCCCUUUCAUGUUAAGGUAUCAUAAUUUUCGGGCAUUUAACCUGGCCAACCCGGAAGCAUUUGGCUUAAAUGUCUGGUCAUUUGUAAAUAGUUCGUGUCGCAGCCGCAGACGCAACAC ....((((.......))))....((((...(((((((((((....((((((..(....)...)))))))))))))))))....)))).....(((.(((((((....)).)))))))).. ( -32.00) >DroEre_CAF1 62256 120 + 1 UCGCCCCUGCAUGUUAAGGUAGCAUAAUUUUCAGGCAUUUAACCUGGCCAACCCGGAAGCAUUUGGCUUAAAUGUCUGGUCAUUUGUAAAUAGUUCGUGUCGCAGCCGCAGACGCAACAC ..((.(((........)))..))((((...(((((((((((....((((((..(....)...)))))))))))))))))....)))).....(((.(((((((....)).)))))))).. ( -34.70) >DroYak_CAF1 64069 120 + 1 UCGCCCUUUCAUGUCAAGGUAGCAUAAUUUUCAGGCAUUUAACCUGGCCAACCCGGAAGCAUUUGGCUUAAAUGUCUGGUCAUUUGUAAAUAGUUCGUGUCGCAGCCGCAGACGCAACAC ..((((((.......))))..))((((...(((((((((((....((((((..(....)...)))))))))))))))))....)))).....(((.(((((((....)).)))))))).. ( -33.70) >consensus UCGCCCUUUCAUGUUAAGGUAGCAUAAUUUUCGGGCAUUUAACCUGGCCAACCCGGAAGCAUUUGGCUUAAAUGUCUGGUCAUUUGUAAAUAGUUCGUGUCGCAGCCGCAGACGCAACAC .....................(((.(((..(((((((((((....((((((..(....)...)))))))))))))))))..)))))).....(((.(((((((....)).)))))))).. (-30.92 = -30.88 + -0.04)
Location | 11,327,686 – 11,327,805 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.83 |
Mean single sequence MFE | -37.08 |
Consensus MFE | -36.42 |
Energy contribution | -36.62 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.44 |
Structure conservation index | 0.98 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.892519 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11327686 119 + 27905053 AACCUGGCCAACCCGGAAGCAUUUGGCUUAAAUGUCUGGUCAUUUGUAAAUAGUUCGUGUCGCAGCCGCAGACGCAACACUUGACGGAAAUGGCCAAGAAAUGAGCCC-CCGUUUGCCAA ....((((.(((.(....).....((((((....(((((((((((.(....(((..(((((((....)).)))))...)))....).)))))))).)))..)))))).-..))).)))). ( -36.80) >DroSec_CAF1 66841 120 + 1 AACCUGGCCAACCCGGAAGCAUUUGGCUUAAAUGUCUGGUCAUUUGUAAAUAGUUCGUGUCGCAGCCGCAGACGCAACACUUGACGGAAAUGGCCAAGAAAUGAGCCCCCCGUUUGCCAA ....((((.(((.(....).....((((((....(((((((((((.(....(((..(((((((....)).)))))...)))....).)))))))).)))..))))))....))).)))). ( -36.80) >DroSim_CAF1 65011 120 + 1 AACCUGGCCAACCCGGAAGCAUUUGGCUUAAAUGUCUGGUCAUUUGUAAAUAGUUCGUGUCGCAGCCGCAGACGCAACACUUGACGGAAAUGGCCAAGAAAUGAGCCCCCCGUUUGCCAA ....((((.(((.(....).....((((((....(((((((((((.(....(((..(((((((....)).)))))...)))....).)))))))).)))..))))))....))).)))). ( -36.80) >DroEre_CAF1 62296 118 + 1 AACCUGGCCAACCCGGAAGCAUUUGGCUUAAAUGUCUGGUCAUUUGUAAAUAGUUCGUGUCGCAGCCGCAGACGCAACACUUGACGGAAAUGGCCAAGAAAUGAGCCC-CCGU-UGCCAA ....((((.(((.(....).....((((((....(((((((((((.(....(((..(((((((....)).)))))...)))....).)))))))).)))..)))))).-..))-))))). ( -36.20) >DroYak_CAF1 64109 119 + 1 AACCUGGCCAACCCGGAAGCAUUUGGCUUAAAUGUCUGGUCAUUUGUAAAUAGUUCGUGUCGCAGCCGCAGACGCAACACUUGACGGAAAUGGCCAAGAAAUGAGCCC-CCGUUUGCCAG ...(((((.(((.(....).....((((((....(((((((((((.(....(((..(((((((....)).)))))...)))....).)))))))).)))..)))))).-..))).))))) ( -38.80) >consensus AACCUGGCCAACCCGGAAGCAUUUGGCUUAAAUGUCUGGUCAUUUGUAAAUAGUUCGUGUCGCAGCCGCAGACGCAACACUUGACGGAAAUGGCCAAGAAAUGAGCCC_CCGUUUGCCAA ....((((.(((.(....).....((((((....(((((((((((.(....(((..(((((((....)).)))))...)))....).)))))))).)))..))))))....))).)))). (-36.42 = -36.62 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:58 2006