Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,327,196 – 11,327,298 |
Length | 102 |
Max. P | 0.963833 |
Location | 11,327,196 – 11,327,298 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.08 |
Mean single sequence MFE | -44.90 |
Consensus MFE | -37.24 |
Energy contribution | -38.30 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.12 |
Mean z-score | -2.27 |
Structure conservation index | 0.83 |
SVM decision value | 1.56 |
SVM RNA-class probability | 0.963833 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11327196 102 + 27905053 CCUCGACUCGGUCCGGUCGCCUCGAGGUUGUAACUUAAUUAAGUCGCAGUCGAUCUGGGCGGGGCAGCAGCUGCUCCA------------------UUUGGGCCAGGAGUUGAGCAAUUG .(((((((((((((((..((((.(((..((..((((....))))..))..)..)).))))(((((((...))))))).------------------.)))))))..))))))))...... ( -45.40) >DroSec_CAF1 66381 102 + 1 CCUCGGCUCAGUCCGGUCGCCUCGAGGUUGUAACUUAAUUAAGUCGCAGUCGAUCUGGGCGGGGCAGCAGCUGCUCCU------------------UUUGGGCCAGGAGUCGAGCAAUUG .((((((((.((((((..((((.(((..((..((((....))))..))..)..)).))))(((((((...))))))).------------------.))))))...))))))))...... ( -44.30) >DroSim_CAF1 64543 102 + 1 CCUCGACUCAGUCCGGUCGCCUCGAGGUUGUAACUUAAUUAAGUCGCAGUCGAUCUGGGCGGGGCAGCAGCUGCUCCU------------------UUUGGGCCAGGAGUCGAGCAAUUG .((((((((.((((((..((((.(((..((..((((....))))..))..)..)).))))(((((((...))))))).------------------.))))))...))))))))...... ( -44.90) >DroEre_CAF1 61808 115 + 1 CCUCGACUCU-----GUCGCCCCGAGGUUGUAACUUAAUUAAGUCCAAGUCGAUCUGGGUGGGGCAGCAGCUGCUCCGGCUGCUCCGGCUGCUCCUUUUGGUGCAGGAGCCGAGCAAUUG .((((.((((-----(((((((((((((((..((((....))))......))))))...))))))((((((((...))))))))..)))(((.((....)).))))))).))))...... ( -45.00) >consensus CCUCGACUCAGUCCGGUCGCCUCGAGGUUGUAACUUAAUUAAGUCGCAGUCGAUCUGGGCGGGGCAGCAGCUGCUCCU__________________UUUGGGCCAGGAGUCGAGCAAUUG .((((((((.((((((..((((.(((..((..((((....))))..))..)..)).))))(((((((...)))))))....................))))))...))))))))...... (-37.24 = -38.30 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:56 2006