Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,326,695 – 11,326,942 |
Length | 247 |
Max. P | 0.967928 |
Location | 11,326,695 – 11,326,810 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.11 |
Mean single sequence MFE | -30.54 |
Consensus MFE | -26.78 |
Energy contribution | -26.74 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.74 |
Structure conservation index | 0.88 |
SVM decision value | 1.62 |
SVM RNA-class probability | 0.967928 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11326695 115 - 27905053 -----GCCAACUGCCUGCUAAUUGAGUGCUGGCAGACAUAAUGUUUUCGGAAACUGAGCAAACUGUCGAGUGAAAUAUGAUUGAAAGUGUAAAUACAUAUUUCAUUGGCAUGGGAAUCAA -----.(((.(((((.((.........)).)))))......(((((..(....).)))))...((((.((((((((((((((.........))).))))))))))))))))))....... ( -32.10) >DroSec_CAF1 65879 115 - 1 -----UCCAACUGCCUGCUAAUUGAGUGCUGGCAGACAUAAUGUUUUCGGAAACUGAGCAAACUGUCGAGUGAAAUAUGAUUGAAAGUGUAAAUAGAUAUUUCAUUGGCCUGGGAAUCAA -----(((..(((((.((.........)).)))))......(((((..(....).)))))....(((.((((((((((.(((.........)))..)))))))))))))...)))..... ( -27.80) >DroSim_CAF1 64041 115 - 1 -----GCCAACUGCCUGCUAAUUGAGUGCUGGCAGACAUAAUGUUUUCGGAAACUGAGCAAACUGUCGAGUGAAAUAUGAUUGAAAGUGUAAAUAGAUAUUUCAUUGGCCUGGGAAUCAA -----(((...((((.((.........)).))))((((...(((((..(....).)))))...)))).((((((((((.(((.........)))..)))))))))))))........... ( -28.10) >DroEre_CAF1 61300 120 - 1 CGAUGGCCAACUGCCUGCUAAUUGAGUGCUGGCAGACAUAAUGUUUUCGGAAACUGAGCAAACUGUCGAAUGAAAUAUGAUUGAAAGUGUAAAUAGAUAUUUCAUUGGCAUGGCAAUCAA .(((.((((.(((((.((.........)).)))))......(((((..(....).)))))...((((.((((((((((.(((.........)))..)))))))))))))))))).))).. ( -35.40) >DroYak_CAF1 63088 120 - 1 CGAUGGCCAACUGCCUGCUAAUUGAGUGCUGGCAGACAUAAUGUUUUCGGAAACUGAGCAAACUGUCGAAUGAAAUAUGAUUGAAAGUGUAAAUAGACAUUUCAUUGGCAUGGGAAUCAA .(((..(((.(((((.((.........)).)))))......(((((..(....).)))))...((((.((((((((...(((.........)))....)))))))))))))))..))).. ( -29.30) >consensus _____GCCAACUGCCUGCUAAUUGAGUGCUGGCAGACAUAAUGUUUUCGGAAACUGAGCAAACUGUCGAGUGAAAUAUGAUUGAAAGUGUAAAUAGAUAUUUCAUUGGCAUGGGAAUCAA ......(((.(((((.((.........)).)))))......(((((..(....).)))))....(((.((((((((((.(((.........)))..))))))))))))).)))....... (-26.78 = -26.74 + -0.04)
Location | 11,326,810 – 11,326,902 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 83.58 |
Mean single sequence MFE | -28.55 |
Consensus MFE | -20.23 |
Energy contribution | -21.73 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.16 |
Structure conservation index | 0.71 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.903846 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11326810 92 + 27905053 ---GACCAUCGA------------CCAGAACCAGGACGCAGUCCGAGCCCACAACUCCGUCCAAUUGGGCGAUGUCCAAGUCCAGUUUUGGUUAAUUGAAAGCAAAC ---..(.((..(------------(((((((..((((.......(((.......)))(((((....)))))........)))).))))))))..)).)......... ( -25.90) >DroSec_CAF1 65994 92 + 1 ---GACCAUCGA------------CCAGAACCAGGACGUUGUCCGAGCCCACAACUCCGUCCAAUUGGGCGAUGUCCAAGUCCAGUUUUGGUUAAUUGAAAGCAAAC ---..(.((..(------------(((((((..(((((((((((((....((......))....))))))))))))).......))))))))..)).)......... ( -28.90) >DroSim_CAF1 64156 92 + 1 ---GACCAUCGA------------CCAGAACCAGGACGUUGUCCGAGCCCACAACUCCGUCCAAUUGGGCGAUGUCCUAGUCCAGUUUUGGUUAAUUGAAAGCAAAC ---..(.((..(------------((((((((((((((((((((((....((......))....)))))))))))))).)....))))))))..)).)......... ( -30.60) >DroEre_CAF1 61420 99 + 1 UGAGACCAUAGACCAGAACCAGAACCAGAACCAGGACGCACCA--------CGACUGCGUCCAAUUGGGCGAUGUCCAAGUCCAGUUUUGGUUAAUUGAAAGCAAAC ..........(((((((((..((..........(((((((...--------....)))))))..((((((...)))))).))..))))))))).............. ( -28.80) >consensus ___GACCAUCGA____________CCAGAACCAGGACGCAGUCCGAGCCCACAACUCCGUCCAAUUGGGCGAUGUCCAAGUCCAGUUUUGGUUAAUUGAAAGCAAAC ........................(((((((..(((((((((........)))))..(((((....)))))........)))).)))))))................ (-20.23 = -21.73 + 1.50)
Location | 11,326,823 – 11,326,942 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.46 |
Mean single sequence MFE | -32.82 |
Consensus MFE | -26.03 |
Energy contribution | -26.43 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.06 |
Structure conservation index | 0.79 |
SVM decision value | 1.24 |
SVM RNA-class probability | 0.934862 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11326823 119 + 27905053 AACCAGGACGCAGUCCGAGCCCACAACUCCGUCCAAUUGGGCGAUGUCCAAGUCCAGUU-UUGGUUAAUUGAAAGCAAACAAAACAAAACGCAGCGGAAAUGCUGCUCAAACACGCUAGA ((((((((((.(((...........))).)))))((((((((.........))))))))-.)))))........................((((((....)))))).............. ( -30.80) >DroSec_CAF1 66007 119 + 1 AACCAGGACGUUGUCCGAGCCCACAACUCCGUCCAAUUGGGCGAUGUCCAAGUCCAGUU-UUGGUUAAUUGAAAGCAAACAAAACAAAACGCAGCGGAAAUGCUGCUCAAACACGCUAGA .....(((((((((((((....((......))....))))))))))))).(((...(((-(((.....(((....)))......))))))((((((....))))))........)))... ( -35.50) >DroSim_CAF1 64169 119 + 1 AACCAGGACGUUGUCCGAGCCCACAACUCCGUCCAAUUGGGCGAUGUCCUAGUCCAGUU-UUGGUUAAUUGAAAGCAAACAAAACAAAACGCAGCGGAAAUGCUGCUCAAACACGCUAGA .((.((((((((((((((....((......))....)))))))))))))).))...(((-(((.....(((....)))......))))))((((((....)))))).............. ( -36.30) >DroEre_CAF1 61448 111 + 1 AACCAGGACGCACCA--------CGACUGCGUCCAAUUGGGCGAUGUCCAAGUCCAGUU-UUGGUUAAUUGAAAGCAAACAAAACAGAGCGCUGCGGAAAUGCUGCUCAAACACGCUAGG ((((((((((((...--------....)))))))((((((((.........))))))))-.)))))....................(((((..(((....))))))))............ ( -32.60) >DroYak_CAF1 63248 109 + 1 AACCAGGACGUAGUC--------CGU---AGUCCAAUUGGGCGAUGUCCAAGUCCAGUUUUUGGUUAAUUGAAAGCAAACAAAACAAAACGCAGCGGAAAUGCUGCUCAAACACGCUAGA .....((((((.(((--------((.---........))))).)))))).(((...(((((..(....)..)))))..............((((((....))))))........)))... ( -28.90) >consensus AACCAGGACGUAGUCCGAGCCCACAACUCCGUCCAAUUGGGCGAUGUCCAAGUCCAGUU_UUGGUUAAUUGAAAGCAAACAAAACAAAACGCAGCGGAAAUGCUGCUCAAACACGCUAGA ((((((((((...................)))))((((((((.........))))))))..)))))........................((((((....)))))).............. (-26.03 = -26.43 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:55 2006