Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,325,592 – 11,325,692 |
Length | 100 |
Max. P | 0.550144 |
Location | 11,325,592 – 11,325,692 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 80.78 |
Mean single sequence MFE | -20.57 |
Consensus MFE | -15.32 |
Energy contribution | -15.57 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.51 |
Structure conservation index | 0.75 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.550144 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11325592 100 - 27905053 ACAUUUUGAGGCUCUUCAAAGAGGCGAGACCGAAUCAUUUGCCAUAACACUUUGGCAAUGCCAUCGUCAUCCUGGCUUUCCAUCCCAUCCG--AUUCCAUCA .........(.((((....)))).)..((..(((((..((((((........)))))).((((.........))))..............)--))))..)). ( -23.30) >DroSec_CAF1 64800 82 - 1 ACAUUUUGAGGCUCUCCAACGAGGCGAGACCGAAUCAUUUGCCAUAACACUUUGGCAAUGCCAUCGUCAUCCU--------------------ACUCCAUCC .......(((........(((((((((.......))..((((((........)))))).))).))))......--------------------.)))..... ( -18.56) >DroSim_CAF1 61083 82 - 1 ACAUUUUGAGGCUCUCCAACGAGGCGAGACCGAAUCAUUUGCCAUAACACUUUGGCAAUGCCAUCGUCAUCCU--------------------AUUCCAUCC ......((((((((.((.....)).))).))((.....((((((........)))))).....)).)))....--------------------......... ( -17.70) >DroEre_CAF1 60147 100 - 1 ACAUUUUGAGGCCCUCCAACGAGGCGAGACCGAAUCAUUUGCCAUAACACUUGGGCAAUGCCAUCGUCAUCCUGGCUUUCCAUCCCAGGCCAU--GUUAUCC .........(((((((....))))((....))........)))((((((((((((....((((.........)))).......))))))...)--))))).. ( -22.70) >consensus ACAUUUUGAGGCUCUCCAACGAGGCGAGACCGAAUCAUUUGCCAUAACACUUUGGCAAUGCCAUCGUCAUCCU____________________AUUCCAUCC .......(((((........((..((....))..))..((((((........)))))).))).))..................................... (-15.32 = -15.57 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:52 2006