Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,544,191 – 1,544,290 |
Length | 99 |
Max. P | 0.834513 |
Location | 1,544,191 – 1,544,290 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 78.97 |
Mean single sequence MFE | -23.87 |
Consensus MFE | -12.18 |
Energy contribution | -12.96 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.29 |
Mean z-score | -2.33 |
Structure conservation index | 0.51 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.834513 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1544191 99 + 27905053 UAAAGCGGGUUGGGAGCUAUUGAUUACAGAAAAGGUUC---CAUGCCACA----UUGUAAAAUGGCAACGGAGUACGGAAAUCUGCAUGAAAAUGCGAACAAAAGC ....((.(((..((((((.((.........)).)))))---)..)))...----(((((...((....))...))))).....(((((....))))).......)) ( -22.30) >DroPse_CAF1 45380 91 + 1 UAACCCAUGUUCUGUGCUAUUGAUUACAAAAAAGGUUC---CACGCCA-----------AAAUGGCAACUG-GAAUGGAAAUCUGCAUGAAAAUGCAGACAAAAGC ...............(((.(((............((((---((.(((.-----------....)))...))-)))).....(((((((....)))))))))).))) ( -24.80) >DroEre_CAF1 45103 97 + 1 --AGCCGAGUUCGGGGCUAUUGAUUACAGAAAAGGUUC---CAUGCCACA----UUGUAAAAUGGCAACGGAGAACGGAAAUCUGCAUGAAAAUGCGAACAAAAGU --..(((..((((..((((((..((((((....(((..---...)))...----))))))))))))..))))...))).....(((((....)))))......... ( -25.90) >DroWil_CAF1 46505 102 + 1 UGUUCCAUGUCCCAGGCUAUUGAUUACAAAAAAGGUUCAUCCACGUUAAA----AUGGCAACUGGCAAAUGAAAAUGAAAAUCUGCAUGAAAAUGCAGACAAAAGC .....(((...((((((((((....((......((.....))..))...)----)))))..))))...)))..........(((((((....)))))))....... ( -21.80) >DroAna_CAF1 43583 103 + 1 UAACCCAUGUUCGGAGCUAUUGAUUACAGAAAAGGUUC---CAUGCCGCUUCAGUCGGGAAAUGGCAACUGAAAUUGAAAAUCUGCAUGAAAAUGCAAACAAAAGC .....((..(((((((((.((.........)).)))))---).(((((.(((......))).)))))...)))..))......(((((....)))))......... ( -23.60) >DroPer_CAF1 46904 91 + 1 UAACCCAUGUUCUGUGCUAUUGAUUACAAAAAAGGUUC---CACGCCA-----------AAAUGGCAACUG-GAAUGGAAAUCUGCAUGAAAAUGCAGACAAAAGC ...............(((.(((............((((---((.(((.-----------....)))...))-)))).....(((((((....)))))))))).))) ( -24.80) >consensus UAACCCAUGUUCGGAGCUAUUGAUUACAAAAAAGGUUC___CACGCCACA____UUG__AAAUGGCAACUGAGAAUGGAAAUCUGCAUGAAAAUGCAAACAAAAGC ........(((....((((((............(((........))).............)))))).................(((((....))))))))...... (-12.18 = -12.96 + 0.78)
Location | 1,544,191 – 1,544,290 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 78.97 |
Mean single sequence MFE | -22.74 |
Consensus MFE | -12.13 |
Energy contribution | -12.80 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.16 |
Mean z-score | -1.82 |
Structure conservation index | 0.53 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.539053 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1544191 99 - 27905053 GCUUUUGUUCGCAUUUUCAUGCAGAUUUCCGUACUCCGUUGCCAUUUUACAA----UGUGGCAUG---GAACCUUUUCUGUAAUCAAUAGCUCCCAACCCGCUUUA ((..(((...((.......((((((.....((..(((((.(((((.......----.))))))))---))))....)))))).......))...)))...)).... ( -20.24) >DroPse_CAF1 45380 91 - 1 GCUUUUGUCUGCAUUUUCAUGCAGAUUUCCAUUC-CAGUUGCCAUUU-----------UGGCGUG---GAACCUUUUUUGUAAUCAAUAGCACAGAACAUGGGUUA ......((((((((....)))))))).(((((.(-(((........)-----------))).)))---))((((.((((((..........))))))...)))).. ( -24.00) >DroEre_CAF1 45103 97 - 1 ACUUUUGUUCGCAUUUUCAUGCAGAUUUCCGUUCUCCGUUGCCAUUUUACAA----UGUGGCAUG---GAACCUUUUCUGUAAUCAAUAGCCCCGAACUCGGCU-- ...................((((((.....(((((....((((((.......----.)))))).)---))))....))))))......((((........))))-- ( -22.70) >DroWil_CAF1 46505 102 - 1 GCUUUUGUCUGCAUUUUCAUGCAGAUUUUCAUUUUCAUUUGCCAGUUGCCAU----UUUAACGUGGAUGAACCUUUUUUGUAAUCAAUAGCCUGGGACAUGGAACA ......((((((((....))))))))((((((.((((((..(..((((....----..)))))..))))))(((...((((.....))))...)))..)))))).. ( -21.50) >DroAna_CAF1 43583 103 - 1 GCUUUUGUUUGCAUUUUCAUGCAGAUUUUCAAUUUCAGUUGCCAUUUCCCGACUGAAGCGGCAUG---GAACCUUUUCUGUAAUCAAUAGCUCCGAACAUGGGUUA (((.(((.(((((.((((((((.(.....)..(((((((((........)))))))))..)))))---))).......))))).))).)))(((......)))... ( -24.00) >DroPer_CAF1 46904 91 - 1 GCUUUUGUCUGCAUUUUCAUGCAGAUUUCCAUUC-CAGUUGCCAUUU-----------UGGCGUG---GAACCUUUUUUGUAAUCAAUAGCACAGAACAUGGGUUA ......((((((((....)))))))).(((((.(-(((........)-----------))).)))---))((((.((((((..........))))))...)))).. ( -24.00) >consensus GCUUUUGUCUGCAUUUUCAUGCAGAUUUCCAUUCUCAGUUGCCAUUU__CAA____UGUGGCAUG___GAACCUUUUCUGUAAUCAAUAGCACCGAACAUGGGUUA (((.((((((((((....)))))))..............((((((............)))))).....................))).)))............... (-12.13 = -12.80 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:41 2006