Locus 4157

Sequence ID 3R_DroMel_CAF1
Location 11,323,870 – 11,323,968
Length 98
Max. P 0.552685
window6662

overview

Window 2

Location 11,323,870 – 11,323,968
Length 98
Sequences 4
Columns 113
Reading direction forward
Mean pairwise identity 81.51
Mean single sequence MFE -21.97
Consensus MFE -13.81
Energy contribution -17.00
Covariance contribution 3.19
Combinations/Pair 1.09
Mean z-score -1.72
Structure conservation index 0.63
SVM decision value 0.04
SVM RNA-class probability 0.552685
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11323870 98 + 27905053
CUCCCUUCCAUCAAAAAAUAAAUA-------UAU--------AUGUGUAUGUCUGAACUGAAAUUUAAAAACGUCGCAAAGAAAUUUGUUAACGUUGGAGGGUUGUUUUGCCA
...((((((.(((........(((-------((.--------...)))))........)))........(((((.(((((....)))))..)))))))))))........... ( -19.39)
>DroSec_CAF1 63115 106 + 1
CUCCCUUCCAUCAAAAAAUAAAUA-------UAUACAUGUGUAUGUGUAUGUCUGAACUGAAAUUUAAAAACGUCGCAAAGAAAUUUGUUAACGUUGGAGGGUUGUUUUGCCA
...((((((............(((-------(((((((....)))))))))).................(((((.(((((....)))))..)))))))))))........... ( -24.90)
>DroSim_CAF1 59395 106 + 1
CUCCCUUCCAUCAAAAAAUAAAUA-------UAUACAUAUAUGUGUGUAUGUCUGAACUGAAAUUUAAAAACGUCGCAAAGAAAUUUGUUAACGUUGGAGGGUUGUUUUGCCA
...((((((.(((........(((-------((((((....)))))))))........)))........(((((.(((((....)))))..)))))))))))........... ( -25.79)
>DroEre_CAF1 58430 94 + 1
CUCCCUUCUAUCAGAAUGAAAAUACAAGUAC-------------------GAGAAAACCGAAAUUUAAAAACGUCGCAAAGAAAUUUGUUAACGUUGGAGGGUUGUUUUGCCA
(((((((.(((..(.((....)).)..))).-------------------)))................(((((.(((((....)))))..)))))))))(((......))). ( -17.80)
>consensus
CUCCCUUCCAUCAAAAAAUAAAUA_______UAU________AUGUGUAUGUCUGAACUGAAAUUUAAAAACGUCGCAAAGAAAUUUGUUAACGUUGGAGGGUUGUUUUGCCA
...((((((......................(((((((....)))))))....................(((((.(((((....)))))..)))))))))))........... (-13.81 = -17.00 +   3.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:41 2006