Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,323,615 – 11,323,724 |
Length | 109 |
Max. P | 0.638574 |
Location | 11,323,615 – 11,323,724 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.72 |
Mean single sequence MFE | -19.08 |
Consensus MFE | -14.76 |
Energy contribution | -14.64 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.10 |
Mean z-score | -1.64 |
Structure conservation index | 0.77 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.638574 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11323615 109 + 27905053 UACCGUAGUAGCUCCAACC--CCCCCAUCAA--------AUACCCCACCUCAACGCUGAAAACGCUCCUGCUUGCGUGGGGAUUU-UUUCAAUUUUUAGCGAAAAUUACAUCAUCACUUA ....(((((.(((......--........((--------((.((((((..(((.((.((......))..))))).))))))))))-...........)))....)))))........... ( -18.11) >DroSec_CAF1 62861 108 + 1 UACCGUAGUAGCUCCAACC--C-CCCAUCAA--------AUACCCCACCUCAGCCCUCAAAUCGCUCCUGCUUGCGUGGGGAUUU-UUUCAAUUUUUAGCGAAAAUUACAUCAUCACUUA ....(((((.(((......--.-......((--------((.((((((...(((...............)))...))))))))))-...........)))....)))))........... ( -16.61) >DroSim_CAF1 59139 108 + 1 UACCGUAGUAGCUCCAACC--C-CCCAUAAA--------AUACCCCACCUCAAUGCUCAAAACGCUCCUGCUUGCGUGGGGAUUU-UUUCAAUUUUUAGCGAAAAUUACAUCAUCACUUA ....(((((.(((......--.-.....(((--------((.((((((..(((.((.............))))).))))))))))-)..........)))....)))))........... ( -19.37) >DroEre_CAF1 58174 107 + 1 UACCGUAGUAGCUCCA---------CGCCA---ACCUCGAUUCCCCACCUCAACGCUCCCA-GGCUUCUGCUUGCGUGGGGAUUUUUUUCAAUUUUUGGCGAAAAUUACAUCAUCACUUA .......((((.....---------(((((---(....((.(((((((...........((-(((....))))).)))))))......)).....))))))....))))........... ( -24.10) >DroYak_CAF1 59836 117 + 1 UACCGUAGUAGCUCAAACCAAC-CCCCCCAAAUACCCCAAUUUCCCACCUCAACGCUUACA-AGCUUCUGCUUGCGUGGGGAUUU-UUUCAAUUUUUAGCGAAAAUUACAUCAUCACUUA ....(((((.(((.(((.....-......((((......))))....(((((.(((....(-(((....))))))))))))....-.......))).)))....)))))........... ( -17.20) >consensus UACCGUAGUAGCUCCAACC__C_CCCAUCAA________AUACCCCACCUCAACGCUCAAA_CGCUCCUGCUUGCGUGGGGAUUU_UUUCAAUUUUUAGCGAAAAUUACAUCAUCACUUA ....(((((.................................((((((..(((.((.............))))).)))))).....((((..........)))))))))........... (-14.76 = -14.64 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:40 2006