Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,323,145 – 11,323,258 |
Length | 113 |
Max. P | 0.687108 |
Location | 11,323,145 – 11,323,258 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 89.01 |
Mean single sequence MFE | -33.80 |
Consensus MFE | -24.92 |
Energy contribution | -25.76 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.04 |
Mean z-score | -1.83 |
Structure conservation index | 0.74 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.687108 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11323145 113 - 27905053 CUGUAAUGGCUAUCCAUUACCGGGGACC----UGCAACGGUCAACGUCAAACCCCAGGCCCAAGAAACUCCCUUGGAAUUACGCUGAUGACUCAAUGUGUUCCUUGGGGAGGAGUAA (.(((((((....))))))).)(((.((----((....(((.........))).)))))))......((((((.(((((.(((.(((....))).))))))))..))))))...... ( -37.40) >DroSec_CAF1 62386 110 - 1 CUGUAAUGGCUAUCCAUUACCG--GACC----UGCAACGGUCAAACUCA-ACCCCAAGCCCAAGAAACUCCCUCGGAAUUACGCUGAUGACUCAAUGUGUUCCUUGGGGAGGAGUAA (.(((((((....))))))).)--((((----......))))..((((.-.((((((......((.......))(((((.(((.(((....))).))))))))))))))..)))).. ( -34.90) >DroSim_CAF1 58668 110 - 1 CUGUAAUGGCUAUCAAUUACCG--GACC----UGCAACGGUCAAACUCA-ACCCCAAGCCCAAGAAACUCCCUCGGAAUUACGCUGAUGACUCAAUGUGUUCCUUGGGGAGGAGUCA (.(((((........))))).)--((((----......))))..((((.-.((((((......((.......))(((((.(((.(((....))).))))))))))))))..)))).. ( -29.80) >DroEre_CAF1 57682 110 - 1 CCGUAAUGGCCAUCCAUUACCG--GACC----UGCAACGGUCAAACUCC-ACCCCAGGCCGAAGAAACUCCCUCGGAAUUACGCUGAUGGCUCAAUGUGCUCCUUGGGGAGGCGGAA (((((((((....)))))).))--)..(----(((..(((((.......-......)))))......((((((.(((..((((.(((....))).)))).)))..)))))))))).. ( -36.32) >DroYak_CAF1 59283 112 - 1 CUGUAAUGGCUAUCCAUUACCA--GACCAAACUCAAAC--UCAAACUCC-ACCCCAAGCUGAAGAAACUCCCCUGGAAUUACGCUGAUGACUCAAUGUGCUCCUUGGGGAGGAGGAA (((((((((....)))))).))--).............--.....((((-.(((((((..(.......(((...)))..((((.(((....))).)))))..))))))).))))... ( -30.60) >consensus CUGUAAUGGCUAUCCAUUACCG__GACC____UGCAACGGUCAAACUCA_ACCCCAAGCCCAAGAAACUCCCUCGGAAUUACGCUGAUGACUCAAUGUGUUCCUUGGGGAGGAGUAA ..(((((((....)))))))....((((..........)))).........................((((((.(((((.(((.(((....))).))))))))..))))))...... (-24.92 = -25.76 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:39 2006