Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,321,463 – 11,321,607 |
Length | 144 |
Max. P | 0.999792 |
Location | 11,321,463 – 11,321,573 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.30 |
Mean single sequence MFE | -38.78 |
Consensus MFE | -31.30 |
Energy contribution | -31.90 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -3.45 |
Structure conservation index | 0.81 |
SVM decision value | 3.26 |
SVM RNA-class probability | 0.998867 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11321463 110 - 27905053 ----------AUCUCAUGUCCGUAGGAGUGGCUUGUUUGCGAACGAUAAGCCCAGCUCCUGCGGCAAUUUAAUGAAUUAUUUAUGUAAGGCCAAAAUCAGAGGGCAGCCAAAUGCAUAAC ----------......(((((((((((((((((((((.......))))))))..))))))))(((......((((.....)))).....))).........)))))((.....))..... ( -35.20) >DroSec_CAF1 60704 105 - 1 ----------AUCUCAUGUCCGUAGGAGUGGCUUGUUUGCGAACGAUAAGCCCAGCUCCUGCGGCAAUUUAAUGAAUUAUUUAUGUAAGGCCAAAAGCAGAG-----CCAAAUGCAUAAC ----------......((.((((((((((((((((((.......))))))))..))))))))))))..............(((((((.((((.......).)-----))...))))))). ( -35.70) >DroSim_CAF1 56944 110 - 1 ----------AUCUCAUGUCCGUAGGAGUGGCUUGUUUGCGAACGAUAAGCCCAGCUCCUGCGGCAAUUUAAUGAAUUAUUUAUGUAAGGCCAAAAGCAGAGGGCGGGCAAAUGCAUAAC ----------......((.((((((((((((((((((.......))))))))..))))))))))))..............(((((((..(((....((.....)).)))...))))))). ( -40.20) >DroEre_CAF1 55929 120 - 1 GGAUCCGACGAUCCGACGUCCGUAGGAGUGGCUUGUUUGCGAACGAUAAGCCAAGCUCCUGCGGCAAUAUAAUGAAUUAUUUAUGUAAGGCCAAAAACAGAGGGCAGCCAAAUGCAUAAC (((((....)))))...((((((((((((((((((((.......))))))))..))))))))(((.((((((........))))))...))).........)))).((.....))..... ( -43.10) >DroYak_CAF1 57459 110 - 1 ----------AUCUGCAGUCCGUAGGAGUGGCUUGUUUGCGAACGAUAAGCCCAGCUCCUGCGGCAAUACAAUGAAUUAUUUAUGUAGGGCCAAAGACAGAGGGCAGCGAAAUGCAUAAC ----------...(((.((((((((((((((((((((.......))))))))..))))))))(((..((((.(((.....)))))))..))).........)))).)))........... ( -39.70) >consensus __________AUCUCAUGUCCGUAGGAGUGGCUUGUUUGCGAACGAUAAGCCCAGCUCCUGCGGCAAUUUAAUGAAUUAUUUAUGUAAGGCCAAAAACAGAGGGCAGCCAAAUGCAUAAC .................((((((((((((((((((((.......))))))))..))))))))(((......((((.....)))).....))).........))))............... (-31.30 = -31.90 + 0.60)
Location | 11,321,503 – 11,321,607 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.67 |
Mean single sequence MFE | -25.72 |
Consensus MFE | -19.68 |
Energy contribution | -19.68 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.73 |
Structure conservation index | 0.77 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.709497 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11321503 104 + 27905053 AUAAUUCAUUAAAUUGCCGCAGGAGCUGGGCUUAUCGUUCGCAAACAAGCCACUCCUACGGACAUGAGAU----------------CCUCGGCUCCUAAAAAGCAUUAACAGCUUUAUCA ....................(((((((((((((((.(((((.................))))))))))..----------------.))))))))))..(((((.......))))).... ( -26.33) >DroSec_CAF1 60739 104 + 1 AUAAUUCAUUAAAUUGCCGCAGGAGCUGGGCUUAUCGUUCGCAAACAAGCCACUCCUACGGACAUGAGAU----------------CCUCGGCUCCUAAAAAACAUUAACAGCUUUAUCA ....................(((((((((((((((.(((((.................))))))))))..----------------.))))))))))....................... ( -22.93) >DroSim_CAF1 56984 104 + 1 AUAAUUCAUUAAAUUGCCGCAGGAGCUGGGCUUAUCGUUCGCAAACAAGCCACUCCUACGGACAUGAGAU----------------CCUCGGCUCCUAAAAAACAUUAACAGCUUUAUCA ....................(((((((((((((((.(((((.................))))))))))..----------------.))))))))))....................... ( -22.93) >DroEre_CAF1 55969 120 + 1 AUAAUUCAUUAUAUUGCCGCAGGAGCUUGGCUUAUCGUUCGCAAACAAGCCACUCCUACGGACGUCGGAUCGUCGGAUCCUCGGCUCCUCGGCUCCUAAAAAACAUUAACAGCUUUAUCA ...............((((.((((((.((((((...(((....)))))))))..........((..(((((....))))).))))))))))))........................... ( -32.50) >DroYak_CAF1 57499 104 + 1 AUAAUUCAUUGUAUUGCCGCAGGAGCUGGGCUUAUCGUUCGCAAACAAGCCACUCCUACGGACUGCAGAU----------------CCUCGGCUCCUAAAAAACAUUAACAGCUUUAUCA .........((((...(((.(((((...(((((...(((....)))))))).))))).)))..))))(((----------------....((((..(((......)))..))))..))). ( -23.90) >consensus AUAAUUCAUUAAAUUGCCGCAGGAGCUGGGCUUAUCGUUCGCAAACAAGCCACUCCUACGGACAUGAGAU________________CCUCGGCUCCUAAAAAACAUUAACAGCUUUAUCA ................(((.(((((...(((((...(((....)))))))).))))).))).............................((((..(((......)))..))))...... (-19.68 = -19.68 + -0.00)
Location | 11,321,503 – 11,321,607 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.67 |
Mean single sequence MFE | -35.44 |
Consensus MFE | -32.70 |
Energy contribution | -32.70 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.54 |
Structure conservation index | 0.92 |
SVM decision value | 4.09 |
SVM RNA-class probability | 0.999792 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11321503 104 - 27905053 UGAUAAAGCUGUUAAUGCUUUUUAGGAGCCGAGG----------------AUCUCAUGUCCGUAGGAGUGGCUUGUUUGCGAACGAUAAGCCCAGCUCCUGCGGCAAUUUAAUGAAUUAU ....(((((.......)))))......(((..((----------------((.....))))((((((((((((((((.......))))))))..)))))))))))............... ( -34.80) >DroSec_CAF1 60739 104 - 1 UGAUAAAGCUGUUAAUGUUUUUUAGGAGCCGAGG----------------AUCUCAUGUCCGUAGGAGUGGCUUGUUUGCGAACGAUAAGCCCAGCUCCUGCGGCAAUUUAAUGAAUUAU .(((...(((.((((......)))).))).....----------------)))...((.((((((((((((((((((.......))))))))..)))))))))))).............. ( -34.40) >DroSim_CAF1 56984 104 - 1 UGAUAAAGCUGUUAAUGUUUUUUAGGAGCCGAGG----------------AUCUCAUGUCCGUAGGAGUGGCUUGUUUGCGAACGAUAAGCCCAGCUCCUGCGGCAAUUUAAUGAAUUAU .(((...(((.((((......)))).))).....----------------)))...((.((((((((((((((((((.......))))))))..)))))))))))).............. ( -34.40) >DroEre_CAF1 55969 120 - 1 UGAUAAAGCUGUUAAUGUUUUUUAGGAGCCGAGGAGCCGAGGAUCCGACGAUCCGACGUCCGUAGGAGUGGCUUGUUUGCGAACGAUAAGCCAAGCUCCUGCGGCAAUAUAAUGAAUUAU .......(((.((((......)))).)))......(((..(((((....))))).......((((((((((((((((.......))))))))..)))))))))))............... ( -40.00) >DroYak_CAF1 57499 104 - 1 UGAUAAAGCUGUUAAUGUUUUUUAGGAGCCGAGG----------------AUCUGCAGUCCGUAGGAGUGGCUUGUUUGCGAACGAUAAGCCCAGCUCCUGCGGCAAUACAAUGAAUUAU .(((...(((.((((......)))).))).....----------------)))....(.((((((((((((((((((.......))))))))..)))))))))))............... ( -33.60) >consensus UGAUAAAGCUGUUAAUGUUUUUUAGGAGCCGAGG________________AUCUCAUGUCCGUAGGAGUGGCUUGUUUGCGAACGAUAAGCCCAGCUCCUGCGGCAAUUUAAUGAAUUAU .......(((.((((......)))).)))............................(.((((((((((((((((((.......))))))))..)))))))))))............... (-32.70 = -32.70 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:30 2006