Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,320,955 – 11,321,075 |
Length | 120 |
Max. P | 0.699331 |
Location | 11,320,955 – 11,321,075 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.50 |
Mean single sequence MFE | -47.98 |
Consensus MFE | -33.93 |
Energy contribution | -35.37 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.17 |
Mean z-score | -1.81 |
Structure conservation index | 0.71 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.699331 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11320955 120 + 27905053 GAACUCUUCGCCACCUACGGCAACAUCGUGGAUGUGAACUUGCUGCGCCACAAGUUCAACAAUAGGUCCCGUGGCGUGGCCUUCUUGCAAUUUGAGUUGGUCCGCGACGCCGAGGUGGCC .........(((((((.((((....((((((((..(((...((..((((((....((.......))....))))))..)).)))...((((....)))))))))))).))))))))))). ( -51.00) >DroSec_CAF1 60178 120 + 1 GAGCUCUUUGCCCCCUUCGGCAACAUCUUGGAUGUGACCUUGCUGCGCCACAGGUUCAACAAUAAGUUCCGUGGCGUGGCCUUCUUGGAUUUCGAGCUGGUCCGCGACGCCGAGGAGGCC .........(((.(((.((((.(((((...)))))((((..((..((((((.((..(........)..))))))))..))...((((.....))))..))))......))))))).))). ( -46.80) >DroSim_CAF1 56418 120 + 1 GAGCUCUUUGCCCCCUACGGCAAACUCUUGGAUGUGACCUUGCUGCGCCACAGGUUCAACAAUAAGUUCCGUGGCGUGGCCUUCUUGGAUUUCGAGCUGGCCCGCGACGCCGAGGAGGCC .........(((.(((.((((........((......))((((.(((((((.((..(........)..)))))))))((((..((((.....))))..)))).)))).))))))).))). ( -46.50) >DroEre_CAF1 55391 120 + 1 GAGCUCUUCGCCGUCUACGGCAUCGUCUUGGAUGUGAACUUGCUGCGCCACAAGUUCAACCGAACUUCCCGCGGAGUGGCCUUCGUGCACUUCAAGCACUGGCGGGACGCCGAGAUGGCC .........(((((((.((((...((.((((...((((((((........)))))))).)))))).((((((((((....))))((((.......))))..)))))).))))))))))). ( -52.10) >DroYak_CAF1 56877 120 + 1 GAGCUCUUCGCCACCUACGGCAACGUCUUGGAUAUCAAUUUGCUGCGCCACAAGUUCAGCAAAAUGUCCCGUGGCGUGGCCUUCGUACAUUUCGAGCACUGCCGGGACGCCGAGAUGGCC ..((.....(((......)))..((((((((.......(((((((.((.....)).)))))))..(((((..((((..((..(((.......)))))..))))))))).)))))))))). ( -43.50) >consensus GAGCUCUUCGCCACCUACGGCAACAUCUUGGAUGUGAACUUGCUGCGCCACAAGUUCAACAAUAAGUCCCGUGGCGUGGCCUUCUUGCAUUUCGAGCUGGGCCGCGACGCCGAGGUGGCC .........(((((((.((((....((((((..........((..((((((...................))))))..))...((((.....)))).....)))))).))))))))))). (-33.93 = -35.37 + 1.44)
Location | 11,320,955 – 11,321,075 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.50 |
Mean single sequence MFE | -47.82 |
Consensus MFE | -34.20 |
Energy contribution | -34.28 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.27 |
Mean z-score | -1.78 |
Structure conservation index | 0.72 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.691642 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11320955 120 - 27905053 GGCCACCUCGGCGUCGCGGACCAACUCAAAUUGCAAGAAGGCCACGCCACGGGACCUAUUGUUGAACUUGUGGCGCAGCAAGUUCACAUCCACGAUGUUGCCGUAGGUGGCGAAGAGUUC .(((((((((((((((.(((............((((..(((((.((...)))).))).))))(((((((((......)))))))))..))).))))...)))).)))))))......... ( -48.20) >DroSec_CAF1 60178 120 - 1 GGCCUCCUCGGCGUCGCGGACCAGCUCGAAAUCCAAGAAGGCCACGCCACGGAACUUAUUGUUGAACCUGUGGCGCAGCAAGGUCACAUCCAAGAUGUUGCCGAAGGGGGCAAAGAGCUC .((((((((((((.....((((...((.........))..((..(((((((((((.....)))....))))))))..))..))))(((((...)))))))))).)))))))......... ( -46.10) >DroSim_CAF1 56418 120 - 1 GGCCUCCUCGGCGUCGCGGGCCAGCUCGAAAUCCAAGAAGGCCACGCCACGGAACUUAUUGUUGAACCUGUGGCGCAGCAAGGUCACAUCCAAGAGUUUGCCGUAGGGGGCAAAGAGCUC .(((((((((((((.(((((((..((.(.....).))..)))).))).)).((((((.((((((..((...))..))))))((......))..)))))))))).)))))))......... ( -49.20) >DroEre_CAF1 55391 120 - 1 GGCCAUCUCGGCGUCCCGCCAGUGCUUGAAGUGCACGAAGGCCACUCCGCGGGAAGUUCGGUUGAACUUGUGGCGCAGCAAGUUCACAUCCAAGACGAUGCCGUAGACGGCGAAGAGCUC .(((.((((((((((((((..((((.......))))...((.....)))))))).(((.((.(((((((((......)))))))))...))..)))..))))).))).)))......... ( -47.80) >DroYak_CAF1 56877 120 - 1 GGCCAUCUCGGCGUCCCGGCAGUGCUCGAAAUGUACGAAGGCCACGCCACGGGACAUUUUGCUGAACUUGUGGCGCAGCAAAUUGAUAUCCAAGACGUUGCCGUAGGUGGCGAAGAGCUC .(((((((((((((((((...((((.......))))...(((...))).))))))..(((((((..(.....)..))))))).................)))).)))))))......... ( -47.80) >consensus GGCCACCUCGGCGUCGCGGACCAGCUCGAAAUGCAAGAAGGCCACGCCACGGGACUUAUUGUUGAACUUGUGGCGCAGCAAGUUCACAUCCAAGACGUUGCCGUAGGGGGCGAAGAGCUC .((((((((((((((..(((.....((.........))..((..(((((((((.............)))))))))..)).........)))..)))...)))).)))))))......... (-34.20 = -34.28 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:27 2006