Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,320,025 – 11,320,145 |
Length | 120 |
Max. P | 0.881696 |
Location | 11,320,025 – 11,320,145 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.67 |
Mean single sequence MFE | -28.82 |
Consensus MFE | -25.45 |
Energy contribution | -25.29 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.14 |
Mean z-score | -1.45 |
Structure conservation index | 0.88 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.881696 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11320025 120 + 27905053 CUUUUGCACCUUGUGCACAUAAAGGGUUUCAUUUUGUCUUGGCACGCAAACUUCUCAGCCAAAUCAGCGAUUUCGCAAGGCGGAAUUUAUUUAAUUUGCAUACGUAUUUAUGUGUUAAAU (((((((((...)))))...))))......(((((((((((((..............)))......(((....)))))))))))))..(((((((..(((((......)))))))))))) ( -24.54) >DroSec_CAF1 59207 119 + 1 CUUUUGCACCUUGUGCACAUAAAGGGUUUCAUUUUGUCUUGGCACGCCAACUUCUCAGCCAAAUCAGCGAUUUCGCAAGGCGGAACUUAU-UAAUUUGCAUACGUAUUUAGGUGCUAAAU .....((((((((((((..(((..((((((....((..(((((..............)))))..))(((....))).....))))))..)-))...)))))).......))))))..... ( -31.75) >DroSim_CAF1 55447 120 + 1 CUUUUGCACCUUGUGCACAUAAAGGGUUUCAUUUUGUCUUGGCACGCCAACUUCUCAGCCAAAUCAGCGAUUUCGCAAGGCGAAAUUUAUUUAAUUUGCAUACGUAUUUAGGUGCUAAAU .....((((((((((((.((.(((......(((((((((((((..............)))......(((....)))))))))))))...))).)).)))))).......))))))..... ( -29.45) >DroEre_CAF1 54382 120 + 1 CUUUUGCACCUUGUGCACAUAAAGGGUUUCAUUUUGUCUUGGCACGCCAACUUUUCAGCCAAAUCAGCGAUUUCGCAAAGUGGAAUUUAUUUAAUUUGCAUUCGGAUUUAGGUGUUAAGU (((..((((((.(((((..(((((((((((((((((..(((((..............)))))..).(((....))))))))))))))).))))...)))))........)))))).))). ( -30.04) >DroYak_CAF1 55880 120 + 1 CUUUUGCACCUUGUGCACAUAAAGGGUUUCAUUUUGUCUUGGCACGCCAACUUCUCAGCCAAAUCAGCGAUUUUGCAAAGUGGAAUUUAUUUAAUUUGCAUUCGGAUUUAGGUGUUAAGU (((..((((((.(((((..((((((((((((((((((.((((....)))).......((.......))......)))))))))))))).))))...)))))........)))))).))). ( -28.30) >consensus CUUUUGCACCUUGUGCACAUAAAGGGUUUCAUUUUGUCUUGGCACGCCAACUUCUCAGCCAAAUCAGCGAUUUCGCAAGGCGGAAUUUAUUUAAUUUGCAUACGUAUUUAGGUGUUAAAU .(((.((((((((((((..(((((((((((....((..(((((..............)))))..))(((....))).....))))))).))))...)))))).......)))))).))). (-25.45 = -25.29 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:25 2006