Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,319,608 – 11,319,715 |
Length | 107 |
Max. P | 0.905357 |
Location | 11,319,608 – 11,319,715 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.32 |
Mean single sequence MFE | -38.78 |
Consensus MFE | -33.36 |
Energy contribution | -34.60 |
Covariance contribution | 1.24 |
Combinations/Pair | 0.97 |
Mean z-score | -1.57 |
Structure conservation index | 0.86 |
SVM decision value | 1.04 |
SVM RNA-class probability | 0.905357 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11319608 107 + 27905053 GGCAAAUGCGGAUCCGCUGGUCCCCGGGGAGUCGCCGACUAGGAUAAGGAGCUGG-------------CCUCCUCCCACAGCAGUCGAGUAAUUAAACUUGAUUAAUUGUCUAGUCAGCA .((....(((..(((.((((...)))))))..))).((((((.((((...((((.-------------..........))))((((((((......))))))))..)))))))))).)). ( -37.70) >DroSec_CAF1 58790 107 + 1 GGCAAAUGCGGAUCCGCUGGUCCCCGGGGAGUCCCCGACUAGGAUAAGGAGCUGG-------------CCUCCUCCCACAGCAGUCGAGUAAUUAAACUUGAUUAAUUGUCUAGUCAGCA ......((((((((....)))))..((((...))))((((((.((((...((((.-------------..........))))((((((((......))))))))..)))))))))).))) ( -35.60) >DroSim_CAF1 55031 107 + 1 GGCAAAUGCGGAUCCGCUGGUCCCCGGGGAGUCCCCGACUAGGAUAAGGAGCUGG-------------CCUCCUCCCACAGCAGUCGAGUAAUUAAACUUGAUUAAUUGUCUAGUCAGCA ......((((((((....)))))..((((...))))((((((.((((...((((.-------------..........))))((((((((......))))))))..)))))))))).))) ( -35.60) >DroEre_CAF1 53964 107 + 1 GGCGAAUGCGGAUCCGCUGGUCCCCGGGGAGUCCCCGACUAGGAUAAGGAGCUGG-------------CCUCCUCCCACAGCAGUCGAGUAAUUAAACUUGAUUAAUUGUCUAGUCAGCA ((.((..(((....)))...)).))((((...))))((((((.((((...((((.-------------..........))))((((((((......))))))))..)))))))))).... ( -37.30) >DroYak_CAF1 55449 119 + 1 GGCAAAUGCGGAUCCACUGGUCCCCGGGGAGUC-CCGACUAGGAUAAGGAGCUGGAGCUGGAGGAGGAGCUCCUCCCACAGCGGUCGAGUAAUUAAACUUGAUUAAUUGUCUAGUCAGCA ......(((((((((.((((...))))))).))-).((((((.((((.........((((..(((((....)))))..))))((((((((......))))))))..)))))))))).))) ( -47.70) >consensus GGCAAAUGCGGAUCCGCUGGUCCCCGGGGAGUCCCCGACUAGGAUAAGGAGCUGG_____________CCUCCUCCCACAGCAGUCGAGUAAUUAAACUUGAUUAAUUGUCUAGUCAGCA ......(((((.(((.((((...)))))))....))((((((.((((((((..((((((.....))))))..))))......((((((((......))))))))..)))))))))).))) (-33.36 = -34.60 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:24 2006