Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,305,056 – 11,305,153 |
Length | 97 |
Max. P | 0.923502 |
Location | 11,305,056 – 11,305,153 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 97.92 |
Mean single sequence MFE | -22.37 |
Consensus MFE | -20.97 |
Energy contribution | -20.97 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.41 |
Structure conservation index | 0.94 |
SVM decision value | 1.16 |
SVM RNA-class probability | 0.923502 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11305056 97 + 27905053 AGACACUAUUUUCGAUUCCAGAGUCAGAGCCCUGACCAAUUUGGAUUUGUUUAAAAGAACAGAAAGUAGUCACCAUGUGGUAAUAAUUUAAAUAUAC ....(((((((((...(((((((((((....)))))...))))))..(((((....)))))))))))))).(((....)))................ ( -24.10) >DroSec_CAF1 39638 95 + 1 AGACACUAUUUUCGAUUCCAGAGUCA--GCCCUGACCAAUUUGGAUUUGUUUAAACGAACAGAAAGUAGUCACCAUGUGGUAAUAAUUUAAAUAUAC ....(((((((((...((((((((((--....))))...))))))..(((((....)))))))))))))).(((....)))................ ( -21.50) >DroSim_CAF1 40489 95 + 1 AGACACUAUUUUCGAUUCCAGAGUCA--GCCCUGACCAAUUUGGAUUUGUUUAAACGAACAGAAAGUAGUCACCAUGUGGUAAUAAUUUAAAUAUAC ....(((((((((...((((((((((--....))))...))))))..(((((....)))))))))))))).(((....)))................ ( -21.50) >consensus AGACACUAUUUUCGAUUCCAGAGUCA__GCCCUGACCAAUUUGGAUUUGUUUAAACGAACAGAAAGUAGUCACCAUGUGGUAAUAAUUUAAAUAUAC ....(((((((((...((((((((((......))))...))))))..(((((....)))))))))))))).(((....)))................ (-20.97 = -20.97 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:18 2006