Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,295,183 – 11,295,278 |
Length | 95 |
Max. P | 0.992724 |
Location | 11,295,183 – 11,295,278 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 94.52 |
Mean single sequence MFE | -24.38 |
Consensus MFE | -21.12 |
Energy contribution | -20.92 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.12 |
Mean z-score | -2.08 |
Structure conservation index | 0.87 |
SVM decision value | 2.35 |
SVM RNA-class probability | 0.992724 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11295183 95 - 27905053 UAUUGGUCCCGCAUGACAAAGUUUAGCACAAUAAAAAAUCAUGUUUAUUGCUAAAUUAUGUUAUGACAGUCUUCUGUGGAGAGUAGCGAUUCUAG ..(((.((((.(((((((.(((((((((..(((((........)))))))))))))).)))))))((((....)))))).)).)))......... ( -24.70) >DroSec_CAF1 29843 95 - 1 UAUUGGUCCCGCAUGACAAAGUUUGAGACAAUAAAAAAUCAUGUUUAUUGCUAUAUUAUGUUAUGACAGUCUUCUGUGGAGAGUAGCGAUUCUAG ..(((.((((.(((((((.(((...((.(((((((........)))))))))..))).)))))))((((....)))))).)).)))......... ( -20.60) >DroSim_CAF1 30600 95 - 1 UAUUGGUCCCGCAUGACAAAGUUUGGGACAAUAAAAAAUCAUGUUUAUUGCUAAAUUAUGUUAUGACAGUCUUCUGUGGAGAGUAGCGAUUCUAG ..(((.((((.(((((((.(((((((..(((((((........)))))))))))))).)))))))((((....)))))).)).)))......... ( -22.90) >DroEre_CAF1 28931 94 - 1 UAUUGGUCCCGCAUGACAAAGUUUAGCACAAUAAAAAAUCAUGUUUAUUGCUGAAUUAUGUUAUGACGGUCUUCUGUGGGGAGC-GGGAUUCUAG ....((((((((((((((.(((((((((..(((((........)))))))))))))).)))))).((((....)))).....))-)))))).... ( -30.40) >DroYak_CAF1 29703 94 - 1 UAUUGGUGCCGCAUGACAAAGUUUAGCACAAUAAAAAAUCAUGUUUAUUGCUAAAUUAUGUUAUGACAGUCUUCUGUGGGGAGU-GCGAUUCUAG .....(..((.(((((((.(((((((((..(((((........)))))))))))))).)))))))((((....))))...).).-.)........ ( -23.30) >consensus UAUUGGUCCCGCAUGACAAAGUUUAGCACAAUAAAAAAUCAUGUUUAUUGCUAAAUUAUGUUAUGACAGUCUUCUGUGGAGAGUAGCGAUUCUAG ........((.(((((((.(((((((..(((((((........)))))))))))))).)))))))((((....))))))(((((....))))).. (-21.12 = -20.92 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:14 2006