Locus 4137

Sequence ID 3R_DroMel_CAF1
Location 11,286,887 – 11,286,983
Length 96
Max. P 0.912681
window6627 window6628

overview

Window 7

Location 11,286,887 – 11,286,983
Length 96
Sequences 4
Columns 96
Reading direction forward
Mean pairwise identity 98.44
Mean single sequence MFE -27.84
Consensus MFE -26.38
Energy contribution -26.63
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -2.22
Structure conservation index 0.95
SVM decision value 0.83
SVM RNA-class probability 0.861160
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11286887 96 + 27905053
UUUUCCUGCUCUGCGUUAGUUUCGCGCAAGCAUUUGGCCCAAACAAACGAUCCAACCAUAAAGAUUGUGUAUCGACAAGGUUAAGAGAGCAGGUAA
....((((((((...........((....)).(((((((.......((((((..........))))))..........)))))))))))))))... ( -27.33)
>DroSec_CAF1 21682 96 + 1
UUUUCCUGCUCUGCGUUAGUUUCGCGCAAGCAUUUGGCCCAAACAAACGAUCCAACCAUAAAGAUUGUGUAUCGACAAGGUUAAGAGAGCAGGUAA
....((((((((...........((....)).(((((((.......((((((..........))))))..........)))))))))))))))... ( -27.33)
>DroSim_CAF1 22314 96 + 1
UUUUCCUGCUCUGCGUUAGUUUCGCGCAAGCAUUUGGCCCAAACAAACGAUCCAACCAUAAAGAUUGUGUAUCGACAAGGUUAAGAGAGCAGGUAA
....((((((((...........((....)).(((((((.......((((((..........))))))..........)))))))))))))))... ( -27.33)
>DroYak_CAF1 21081 96 + 1
UUUUCCUGCUCUGCGUUAGUUUUGCGCAAGCGUUUGGCCCAAACAAACGAUCCAACCAUAAAGAUUGCGUAUCGACAAGGUUAAGAGAGCAGGUAA
....((((((((((.((.(((.(((((((.((((((.......))))))...............)))))))..))))).))....))))))))... ( -29.39)
>consensus
UUUUCCUGCUCUGCGUUAGUUUCGCGCAAGCAUUUGGCCCAAACAAACGAUCCAACCAUAAAGAUUGUGUAUCGACAAGGUUAAGAGAGCAGGUAA
....((((((((...........((....)).(((((((.......((((((..........))))))..........)))))))))))))))... (-26.38 = -26.63 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 11,286,887 – 11,286,983
Length 96
Sequences 4
Columns 96
Reading direction reverse
Mean pairwise identity 98.44
Mean single sequence MFE -28.20
Consensus MFE -28.11
Energy contribution -27.93
Covariance contribution -0.19
Combinations/Pair 1.04
Mean z-score -2.23
Structure conservation index 1.00
SVM decision value 1.08
SVM RNA-class probability 0.912681
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11286887 96 - 27905053
UUACCUGCUCUCUUAACCUUGUCGAUACACAAUCUUUAUGGUUGGAUCGUUUGUUUGGGCCAAAUGCUUGCGCGAAACUAACGCAGAGCAGGAAAA
...(((((((((..........((((...(((((.....))))).))))(((((.(((((.....))))).)))))......).)))))))).... ( -28.10)
>DroSec_CAF1 21682 96 - 1
UUACCUGCUCUCUUAACCUUGUCGAUACACAAUCUUUAUGGUUGGAUCGUUUGUUUGGGCCAAAUGCUUGCGCGAAACUAACGCAGAGCAGGAAAA
...(((((((((..........((((...(((((.....))))).))))(((((.(((((.....))))).)))))......).)))))))).... ( -28.10)
>DroSim_CAF1 22314 96 - 1
UUACCUGCUCUCUUAACCUUGUCGAUACACAAUCUUUAUGGUUGGAUCGUUUGUUUGGGCCAAAUGCUUGCGCGAAACUAACGCAGAGCAGGAAAA
...(((((((((..........((((...(((((.....))))).))))(((((.(((((.....))))).)))))......).)))))))).... ( -28.10)
>DroYak_CAF1 21081 96 - 1
UUACCUGCUCUCUUAACCUUGUCGAUACGCAAUCUUUAUGGUUGGAUCGUUUGUUUGGGCCAAACGCUUGCGCAAAACUAACGCAGAGCAGGAAAA
...((((((((.((((((.((..(((.....)))..)).))))))..((((.((((..(((((....))).)).)))).)))).)))))))).... ( -28.50)
>consensus
UUACCUGCUCUCUUAACCUUGUCGAUACACAAUCUUUAUGGUUGGAUCGUUUGUUUGGGCCAAAUGCUUGCGCGAAACUAACGCAGAGCAGGAAAA
...(((((((((..........((((...(((((.....))))).))))(((((.(((((.....))))).)))))......).)))))))).... (-28.11 = -27.93 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:08 2006