| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,269,634 – 11,269,750 |
| Length | 116 |
| Max. P | 0.772613 |
| Location | 11,269,634 – 11,269,750 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 79.77 |
| Mean single sequence MFE | -42.09 |
| Consensus MFE | -27.33 |
| Energy contribution | -28.37 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.772613 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11269634 116 + 27905053 AGCCUCCGAUUGAAUUCAAGCUCCUGCUGCUACUCACUCCAGUGCCCCUCGGUCUGCUGCUGAUGCUGCUCCCGAUGGCACUUCUCCUUCGGCAAUGUGGCGGCGGAGUGCAGCUG .((((((((......))........((((((((.......((((((..((((...((.((....)).))..)))).))))))....(....)....)))))))))))).))..... ( -43.20) >DroSec_CAF1 4677 116 + 1 AGCCUCCAAUUGAGUUCAAGCUCCUGCUGCUACUCACUCCAGUGCCCCUCGGUCUGCUGCUAAUGCUGCUCCCGAUGGCACUUCUCCUCCGGCAAUGUGGCGGUGGAGUGCAGCUG ...........((((....))))..(((((..........((((((..((((...((.((....)).))..)))).)))))).((((.(((.(.....).))).)))).))))).. ( -43.70) >DroSim_CAF1 4662 116 + 1 AGCCUCCAAUUGAAUUCAAGCUCCUGCUGCUACUCACUCCAGUGCCCCUCGGUCUGCUGCUAAUGCUGCUCCCGAUGGCACUUCUCCUCCGGCAAUGCGGCGGCGGAGUGCAGCUG .((((((..(((....)))(((.((((((((.........((((((..((((...((.((....)).))..)))).))))))........))))..)))).))))))).))..... ( -42.03) >DroEre_CAF1 3305 116 + 1 CACUUCCAAUUGAAUUCAAGCUCCUGCUGCUACUCAAGCCAGUGCUCCUCGGUCUGCUGCUGAUGCUGCUCCCGAUGGCACUUCUCCUCCGGCAGUGUGCCGGCGGAGUGCAGCUG .........(((....)))......(((((..........((((((..((((...((.((....)).))..)))).)))))).((((.(((((.....))))).)))).))))).. ( -43.40) >DroYak_CAF1 3379 116 + 1 AGCCACCAAUUGAAUUCAAACUCCGGCUGCUACUCAAUCCCGUGCCACGCGGUCUGCUGCUGAUGCUGCUCCCGAUGGCACUUCUCCUCCGGCAAUGUGCCGGCGGAUUGCAGCUG .........(((....)))....(((((((...........((((((((.((...((.((....)).)).)))).))))))...(((.(((((.....))))).)))..))))))) ( -45.70) >DroAna_CAF1 3588 96 + 1 -----------GAACUGGGACUACUGCUAAUGCU------GUUGGUGCUCGUCAUGCUGCUCAUG---CUCCGGACGGCGCUGCGUUUGCGGCAACUUGGCGGCGGUGAGCAUCUG -----------......(((....((((..((((------((..(.((.((((.((..((....)---)..))))))))(((((....)))))...)..))))))...))))))). ( -34.50) >consensus AGCCUCCAAUUGAAUUCAAGCUCCUGCUGCUACUCACUCCAGUGCCCCUCGGUCUGCUGCUGAUGCUGCUCCCGAUGGCACUUCUCCUCCGGCAAUGUGGCGGCGGAGUGCAGCUG .........................(((((..........((((((..((((...((.((....)).))..)))).)))))).((((.(((.(.....).))).)))).))))).. (-27.33 = -28.37 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:59 2006