Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,267,032 – 11,267,152 |
Length | 120 |
Max. P | 0.520506 |
Location | 11,267,032 – 11,267,152 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.11 |
Mean single sequence MFE | -48.78 |
Consensus MFE | -39.37 |
Energy contribution | -40.07 |
Covariance contribution | 0.70 |
Combinations/Pair | 1.14 |
Mean z-score | -1.99 |
Structure conservation index | 0.81 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.520506 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11267032 120 - 27905053 GACUCCAUGCCCAGGAACGAGGGCUGGAACAGAGCCUCGGGGCAGCGGAAGCGCUCGUUGCCAAUGGUGAUCACCUGGCCGUCAGGCAACUCGUACGACUUCUCCAGCGAGGUGGAGGCG ...((((.((((........)))))))).....(((((.((((.((....))))))((((((.(((((.(.....).)))))..)))))).......(((((......))))).))))). ( -50.60) >DroVir_CAF1 696 120 - 1 GACUCCAUGCCCAAGAACGAAGGCUGGAACAGAGCCUCGGGGCAGCGGAAACGCUCAUUGCCAAUGGUAAUGACCUGACCAUCAGGCAACUCAUACGACUUCUCCAGGGAUGUGGAGGCG ..((((((((((......((.((((.......))))))((((..(((....)))((((((((...))))))))((((.....))))...............)))).))).)))))))... ( -45.70) >DroGri_CAF1 696 120 - 1 GACUCCAUGCCCAAGAACGAGGGCUGGAACAGAGCUUCGGGGCAACGGAAACGCUCAUUGCCAAUGGUGAUGACCUGACCAUCGGGCAACUCAUACGACUUCUCCAGGGAGGUGGAGGCG ...((((.((((........))))))))...((((.....(....)(....)))))...(((....((((((.((((.....))))))..)))).(.((((((....)))))).).))). ( -43.40) >DroWil_CAF1 696 120 - 1 GAUUCCAUGCCCAAGAAAGAGGGCUGGAACAGGGCCUCAGGGCAACGGAAGCGCUCAUUGCCAAUGGUGAUGACCUGACCAUCGGGCAACUCGUAGGACUUCUCCAGCGAGGUAGAGGCA ..(((((.((((........)))))))))....(((((.((((..(....).)))).(((((.(((((.(.....).)))))..)))))(((((.(((....))).)))))...))))). ( -51.00) >DroAna_CAF1 696 120 - 1 GACUCCAUGCCCAAGAACGAGGGCUGGAACAGGGCCUCAGGGCAGCGGAAACGCUCGUUGCCAAUGGUGAUGACCUGGCCGUCGGGCAACUCGUAAGAUUUCUCCAGGGAAGUAGAGGCG ...((((.((((........)))))))).....(((((...((((((....)))).((((((.(((((.(.....).)))))..))))))..))...((((((....)))))).))))). ( -49.50) >DroPer_CAF1 6634 120 - 1 GACUCCAUUCCCAGGAAGGAAGGCUGGAACAGGGCCUCAGGGCAGCGGAAACGCUCGUUGCCAAUGGUGAUGACCUGUCCGUCGGGCAACUCGUACGACUUCUCCAAGGAGGUGGAGGCG ..((((((..((.(((..((((...(((.(((((((....))).(((....)))((((..((...))..)))))))))))(((((....).)).))..)))))))..))..))))))... ( -52.50) >consensus GACUCCAUGCCCAAGAACGAGGGCUGGAACAGAGCCUCAGGGCAGCGGAAACGCUCAUUGCCAAUGGUGAUGACCUGACCAUCGGGCAACUCGUACGACUUCUCCAGGGAGGUGGAGGCG ...((((.((((........)))))))).....(((((.(((.((((....))))..(((((.(((((.(.....).)))))..)))))))).....((((((....)))))).))))). (-39.37 = -40.07 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:58 2006