Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,261,281 – 11,261,419 |
Length | 138 |
Max. P | 0.954049 |
Location | 11,261,281 – 11,261,393 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 78.02 |
Mean single sequence MFE | -34.17 |
Consensus MFE | -14.10 |
Energy contribution | -17.04 |
Covariance contribution | 2.95 |
Combinations/Pair | 1.23 |
Mean z-score | -2.22 |
Structure conservation index | 0.41 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.519656 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11261281 112 + 27905053 GUGAGUUGCAUUUGGAAAUCUUUCACCGC-UGCAUUUCUCAUUGUUGCUGGC---GGUACUAGUACUGGUACUG-GUACUGGUACUGGUACUGGUACUGGGACUGGGUCUGGUGCUC .......((((..((...((..(((((((-((((...........))).)))---))).(((((((..((((..-(((....)))..))))..)))))))))..)).))..)))).. ( -45.30) >DroSec_CAF1 20185 100 + 1 GUGAGUUGCAUUUGGAAAUCUUUCACCGC-UGCAUUUCUCAUUGUUGCUGGC---GGUACUAGUACUGGUACUG-GUACUUG------------GACUGGUACUGGGUCUGGUGCUC ((.(((.(((...(((((((.........-.).))))))...))).))).))---((((((((..(..((((..-((.....------------.))..))))..)..)))))))). ( -35.00) >DroSim_CAF1 23086 100 + 1 GUGAGUUGCAUUUGGAAAUCUUUCACCGC-UGCAUUUCUCAUUGUUGCUGGC---GGUACUAGUACUGGUACUG-GUACUGG------------GACUGGGACUGGGUCUGGUGCUC .......((((..((...((..(((((((-((((...........))).)))---))).(((((.(..(((...-.)))..)------------.)))))))..)).))..)))).. ( -30.80) >DroEre_CAF1 20945 94 + 1 UGGAGUUGCAUUUGGAAAUCUUUCACCGC-UGCAUUUCUCAUUGUUGCUGGC---GGUACUAGUACUGGUACUG-GUACUGG------------UACUGGUAG------UGGUACUU ..(((.((((..(((..........))).-))))...)))..((..((((.(---((((((((((((......)-)))))))------------))))).)))------)..))... ( -33.90) >DroYak_CAF1 21162 89 + 1 GUGGGCUGCAUUUGGAAAUCUUUCACCGCCUGCAUUUCUCAUUGUUGCUGGC---GGUGCUAGUACGAGUACU-------GG------------UACUGGUAG------UGGUACUU (..(((.......((....))......)))..).........((..((((.(---((((((((((....))))-------))------------))))).)))------)..))... ( -30.92) >DroAna_CAF1 20856 95 + 1 GUGAGUUGCAUUUGGAAAUCUUUCACUGC-UGG------UACUGGUACUGGCUCUGGCACUGGCACUGGCACUGGGUACUGA------------UACUGGUACUGGUACUGGUG--- (((((................))))).((-..(------(((..((((..(.((..((.(..(........)..)))...))------------..)..))))..))))..)).--- ( -29.09) >consensus GUGAGUUGCAUUUGGAAAUCUUUCACCGC_UGCAUUUCUCAUUGUUGCUGGC___GGUACUAGUACUGGUACUG_GUACUGG____________UACUGGUACUGGGUCUGGUGCUC ((.(((.(((...(((((((...........).))))))...))).))).))...((((((((..((((((((.........................))))))))..)))))))). (-14.10 = -17.04 + 2.95)
Location | 11,261,318 – 11,261,419 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 86.49 |
Mean single sequence MFE | -33.00 |
Consensus MFE | -24.43 |
Energy contribution | -26.24 |
Covariance contribution | 1.81 |
Combinations/Pair | 1.04 |
Mean z-score | -2.60 |
Structure conservation index | 0.74 |
SVM decision value | 1.44 |
SVM RNA-class probability | 0.954049 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11261318 101 + 27905053 UCAUUGUUGCUGGCGGUACUAGUACUGGUACUGGUACUGGUACUGGUACUGGUACUGGGACUGGGUCUGGUGCUCGUACUGCUCUUUCUACUGGUCUACCC ...........((((((((((((((..(((((......)))))..))))))))))))((((..(....((.((.......)).)).....)..)))).)). ( -40.90) >DroSec_CAF1 20222 89 + 1 UCAUUGUUGCUGGCGGUACUAGUACUGGUACUGGUACUUG------------GACUGGUACUGGGUCUGGUGCUCGUACUGCUCUUUCUACUGGUCUACCC ...........((((((((.(((((..(..(..(((((..------------....)))))..)..)..))))).)))))))).........((....)). ( -32.90) >DroSim_CAF1 23123 89 + 1 UCAUUGUUGCUGGCGGUACUAGUACUGGUACUGGUACUGG------------GACUGGGACUGGGUCUGGUGCUCGUACUGCUCUUUCUACUGGUCUACCC ...........(((((((((((((....)))))))))))(------------(((..(((..((((..((((....))))))))..))..)..)))).)). ( -29.40) >DroEre_CAF1 20982 83 + 1 UCAUUGUUGCUGGCGGUACUAGUACUGGUACUGGUACUGG------------UACUGGUAG------UGGUACUUGCACUGCUCUUUCUACUGGUCUACCC .....((.((..((((((((((((((......))))))))------------)))))((((------((.......))))))........)..))..)).. ( -28.80) >consensus UCAUUGUUGCUGGCGGUACUAGUACUGGUACUGGUACUGG____________GACUGGGACUGGGUCUGGUGCUCGUACUGCUCUUUCUACUGGUCUACCC ...........((((((((.((((((((..(((((((..(..............)..)))))))..)))))))).)))))))).........((....)). (-24.43 = -26.24 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:57 2006