Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,255,723 – 11,255,827 |
Length | 104 |
Max. P | 0.659448 |
Location | 11,255,723 – 11,255,827 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 83.70 |
Mean single sequence MFE | -26.45 |
Consensus MFE | -16.97 |
Energy contribution | -17.17 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.18 |
Mean z-score | -1.96 |
Structure conservation index | 0.64 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.659448 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11255723 104 + 27905053 CCGUUGCUUUGGGAAAUUUUUGUUUAACUUUUCGUGUACA------UAU----GUUUGUACAUGUGUUUGUAUGCAGCACGGUCUUUACUUUAGCUGAU-UUUCCAGCUGCAGAA ...((((.((((((((((...(((.......(((((((((------(((----((....)))))))).((....))))))))..........))).)))-)))))))..)))).. ( -26.93) >DroSec_CAF1 14650 101 + 1 CCGUUGCUUUGGGAAAUUUUUGUUUAACUUUUCGUAUACA------U------A--UGUACAUGUGUUUGUAUGCAGCACGGUCUUUACUUUAGCUGAUAUUUCCAGCUGCAGAA ((((.(((...(((((.((......)).)))))(((((((------.------(--..(....)..).))))))))))))))......((.((((((.......)))))).)).. ( -24.50) >DroSim_CAF1 15907 103 + 1 CCGUUGCUUUGGGAAAUUUUUGUUUAACUUUUCGUGUACA------UAC----A--UGUACAUGUGUUUGUAUGGAGCACGGUCUUUACUUUGGCUGAUUUUUCCAUCUGCAGAA ...((((..(((((((....(((((.((....((((((((------...----.--)))))))).....))...)))))(((((........)))))..)))))))...)))).. ( -28.00) >DroEre_CAF1 15273 112 + 1 CCGUUGCCUUGGGAAAUUUUUGUUUAACUUUUCAUGUACUAGUACAUACGAGUA--GGUACGUGUGUUUGUAUGCAACUUGGUCUUUACUUUGGCUGAU-UUUCCAGCUGCAGAA ...((((.((((((((((.((((.((......((((((((..(((......)))--))))))))......)).))))...((((........)))))))-)))))))..)))).. ( -26.90) >DroYak_CAF1 15326 110 + 1 CCGUUGCUUUGGGAAAAUUUUGUUUAACUUUUCAUGUACUCGUACU--CGUGCA--UGCAUGUGUAUUUGUAUGCAGCUUGGUCUUUACUUUGCCUGAU-UUUCCAGCUGCAGAA ...((((....((((((((................((((..((((.--((((..--..)))).))))..))))...((..(((....)))..))..)))-)))))....)))).. ( -25.90) >consensus CCGUUGCUUUGGGAAAUUUUUGUUUAACUUUUCGUGUACA______UAC____A__UGUACAUGUGUUUGUAUGCAGCACGGUCUUUACUUUGGCUGAU_UUUCCAGCUGCAGAA ...((((..((((((....((((.((......(((((((..................)))))))......)).))))..(((((........)))))...))))))...)))).. (-16.97 = -17.17 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:55 2006