Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,255,444 – 11,255,537 |
Length | 93 |
Max. P | 0.961880 |
Location | 11,255,444 – 11,255,537 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 79.55 |
Mean single sequence MFE | -32.10 |
Consensus MFE | -14.64 |
Energy contribution | -15.48 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.27 |
Mean z-score | -3.29 |
Structure conservation index | 0.46 |
SVM decision value | 1.53 |
SVM RNA-class probability | 0.961880 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11255444 93 + 27905053 ---UCG--UGGA-----------AC-------CAAAGCAGCAAGGCAACUUGUUGC-GGGGAAUUUUCUAUCUUUCGCCAGCGGCCUUUUCUCUUUGUGCUUUCUGCUUUUCC-AUUU ---..(--((((-----------(.-------....((((((((....))))))))-((.(((..........))).))(((((......(.....)......))))).))))-)).. ( -28.30) >DroPse_CAF1 15434 99 + 1 CAGCGG--UGGA-----------GCGAUGGAGCGGUGGAGCAGAGUAACUUGUUGUUGGGGAAUUUUC----UUUUGCCAGCGGACUUUUCUCUUUGUG-UUGCUGCUUUUCC-AUUG ...(((--((((-----------(.....((((((..(.((((((......((((((((.(((.....----.))).))))).)))......)))))).-)..))))))))))-)))) ( -35.20) >DroSec_CAF1 14395 93 + 1 ---UCG--UGGA-----------AC-------CAAAGCAGCAAGGCAACUUGUUGC-GGGGAAUUUUCUAUCUUUCGCCAGCGGGCUUUUCUCUUUGUGCUUGCUGCUUUUCC-AUUU ---..(--((((-----------((-------(...((((((((....))))))))-..))...............((.(((((((............)))))))))..))))-)).. ( -34.80) >DroSim_CAF1 15623 93 + 1 ---UCG--UGGA-----------AC-------CAAAGCAGCGAGGCAACUUGUUGC-GGGGAAUUUUCUAUCUUUCGCCAGCGGGCUUUUCUCUUUGUGCUUGCUGCUUUUCC-AUUU ---..(--((((-----------((-------(...((((((((....))))))))-..))...............((.(((((((............)))))))))..))))-)).. ( -34.50) >DroEre_CAF1 14992 93 + 1 ---UCG--UGGA-----------GG-------CAAAGCAACAAGGCAACUUGUUGC-GGGGAAUUUUCUAUCUUUCGCCAGCGGGCUUUUCUCUUUGUGCUUUCUGCUUUUCC-AUUU ---..(--((((-----------((-------(...((((((((....))))))))-((.(((..........))).))((..(((............)))..)))))..)))-)).. ( -30.60) >DroAna_CAF1 14737 98 + 1 ---CUGAAUGGAGCAGAGUCUCAGC-------CAAACUA-----GCAACUUGUUGC-GGGAAAUUUUC----UUUAGCCAGCGGGCUUUUCUCUUUGUGCUUUCUGCUUUUCCCAUUU ---..(((((((((((((....(((-------((((...-----((((....))))-((((((.....----...((((....)))))))))))))).))))))))))....)))))) ( -29.20) >consensus ___UCG__UGGA___________AC_______CAAAGCAGCAAGGCAACUUGUUGC_GGGGAAUUUUCUAUCUUUCGCCAGCGGGCUUUUCUCUUUGUGCUUGCUGCUUUUCC_AUUU .........(((........................((((((((....)))))))).((.(((..........))).))(((((......(.....)......)))))..)))..... (-14.64 = -15.48 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:54 2006