Locus 4126

Sequence ID 3R_DroMel_CAF1
Location 11,251,609 – 11,251,714
Length 105
Max. P 0.690425
window6613

overview

Window 3

Location 11,251,609 – 11,251,714
Length 105
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 87.90
Mean single sequence MFE -35.72
Consensus MFE -26.66
Energy contribution -28.10
Covariance contribution 1.44
Combinations/Pair 1.03
Mean z-score -1.76
Structure conservation index 0.75
SVM decision value 0.33
SVM RNA-class probability 0.690425
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11251609 105 - 27905053
CCGGGCAGAGGCAGCCAUUCCUGCAUUUCAGCGAUCACUUGACGGACCUGCGCAUCUGCAACUGGAAACGGAGAUGGGAAUGGUUGCACUUAGAAAAAAAUUUCU------
.......((((((((((((((.(((..((..(((....)))...))..))).(((((....(((....))))))))))))))))))).)))(((((....)))))------ ( -35.50)
>DroSec_CAF1 10641 105 - 1
CCGGGCAGAGGCAGCCAUUCCUGCAUUUCAGCGAUCACUUGACGGACAUGCGCAUCUGCAACUGUAAACGGAGAUGGGAAUGGUUGCACUGAGAAAACAAUUUCU------
.....(((..(((((((((((.((((.((..(((....)))...)).)))).(((((.(..........).)))))))))))))))).)))(((((....)))))------ ( -35.10)
>DroSim_CAF1 11823 105 - 1
CCGGGCAGAGGCAGCCAUUCCUGCAUUUCAGCGAUCACUUGACGGACAUGCGCAUCUGCAACUGGAAACGGAGAUGGGAAUGGUUGCACUGAGAAAAAAAUUUCU------
.....(((..(((((((((((.((((.((..(((....)))...)).)))).(((((....(((....))))))))))))))))))).)))(((((....)))))------ ( -38.30)
>DroEre_CAF1 11164 100 - 1
CCGGGCUGAGGCAGCCAUUCCGCCAAUUCGGCGAUCACCUGACGGACCUGCGCAUCUGCAACUGGAAACGGAGAUGGGAAUGGUGGCACUGAGCGAAAAA-----------
....(((.((((.(((((((((((.....))).(((...((.((((........)))))).(((....))).))).)))))))).)).)).)))......----------- ( -37.60)
>DroYak_CAF1 11141 111 - 1
CCGGGCAGAGGCAGCCAUUCCUCCAUUUCGGCGAUCACUUGACGGACCUGCGCAUCUGCAACUGGAAACCGGGAUGGGAAUGCUCGCACUGAGCGAAAAAAAGCUAUUAAA
.((..(((..(((((.(((((..(((..(((...(((.(((.((((........))))))).)))...)))..))))))))))).)).)))..))................ ( -32.10)
>consensus
CCGGGCAGAGGCAGCCAUUCCUGCAUUUCAGCGAUCACUUGACGGACCUGCGCAUCUGCAACUGGAAACGGAGAUGGGAAUGGUUGCACUGAGAAAAAAAUUUCU______
.....(((..(((((((((((..((((((.....(((.(((.((((........))))))).))).....))))))))))))))))).))).................... (-26.66 = -28.10 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:53 2006