Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,243,453 – 11,243,562 |
Length | 109 |
Max. P | 0.827927 |
Location | 11,243,453 – 11,243,562 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 83.07 |
Mean single sequence MFE | -26.60 |
Consensus MFE | -20.13 |
Energy contribution | -20.02 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -2.27 |
Structure conservation index | 0.76 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.807796 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11243453 109 + 27905053 C-AC-------A-UUUUGC-UAUCGCUGCUCAUUGCAAUGCCCAUCAAAGCUGGCUGUGAUACGAUUCAAAUGCAGAAAUAUCUUUCUUCAGCCCUUUUUGAUGACAUUGAAAGUAAGA .-..-------.-((((((-(.((((........))((((..((((((((..((((((((......))).....(((((....))))).)))))..)))))))).)))))).))))))) ( -27.60) >DroVir_CAF1 2585 108 + 1 U-AC-------UUUUCUGC-UA-CGUUGCCCUUUGCAAUGCCCAUCAAAGCUGGCUGUGAUACGAUUCAAUUGCAGAUAUAUCAUUC-UCAGCCCUUUUUGAUGACAUUGAAAGUAAGA (-((-------((((....-..-((((((.....))))))..((((((((..(((((.((...(((..............)))..))-.)))))..)))))))).....)))))))... ( -27.94) >DroGri_CAF1 2726 109 + 1 U-AC------UCUUUUUGC-UA-CAUUGCCCUUUGCAAUGCCCAUCAAAGCUGGCUGUGAUACGAUUCAAUUGCAGAUAUAUCAUUC-UCAGCCCUUUUUGAUGACAUUGAAAGUAAGA .-..------...((((((-(.-((((((.....))))))..((((((((..(((((.((...(((..............)))..))-.)))))..))))))))........))))))) ( -28.14) >DroWil_CAF1 2895 110 + 1 GGAA-------A-AA-UGCAAAACGAUGCUCAUUGCAAUGCCCAUCAAAGCUGGCUGUGAUACGCUUCAAAUGCAAAAAUAUCUUUCUUCAGCCCUUUUUGAUGACAUUGAAAGUAAGA ....-------.-..-(((....((((....))))(((((..((((((((..(((((.((((.((.......)).....))))......)))))..)))))))).)))))...)))... ( -23.00) >DroMoj_CAF1 2613 115 + 1 U-ACUGUUAAUGUUACUGU-UA-CUUCGCCCUUCGCAGUGCCCAUCAAAGCUGGCUGUGAUACAAUUCAAUUACAGAAAUAUCAUUC-UCAGCCCUUUUUGAUGACACUGAAAGUAAGA .-................(-((-(((.........(((((..((((((((..((((((((((...(((.......))).)))))...-.)))))..)))))))).))))).)))))).. ( -26.40) >DroAna_CAF1 2700 106 + 1 U-UC-------A-AU-CGG-AAUCUAGGCUUAUUGCAAUGCCCAUCAAAGCUGGCUGUGAUACACUUCAAAUGCAGAAAUAUC--UCUUCAGCCCUUUUUGAUGACAUUGAAAGUAAGA .-..-------.-..-...-........((((((.(((((..((((((((..(((((.((((...(((.......))).))))--....)))))..)))))))).)))))..)))))). ( -26.50) >consensus U_AC_______A_UU_UGC_UA_CGUUGCCCAUUGCAAUGCCCAUCAAAGCUGGCUGUGAUACGAUUCAAAUGCAGAAAUAUCAUUC_UCAGCCCUUUUUGAUGACAUUGAAAGUAAGA ...................................(((((..((((((((..((((((((......)))......((....))......)))))..)))))))).)))))......... (-20.13 = -20.02 + -0.11)
Location | 11,243,453 – 11,243,562 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 83.07 |
Mean single sequence MFE | -29.85 |
Consensus MFE | -22.65 |
Energy contribution | -22.18 |
Covariance contribution | -0.47 |
Combinations/Pair | 1.14 |
Mean z-score | -2.36 |
Structure conservation index | 0.76 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.827927 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11243453 109 - 27905053 UCUUACUUUCAAUGUCAUCAAAAAGGGCUGAAGAAAGAUAUUUCUGCAUUUGAAUCGUAUCACAGCCAGCUUUGAUGGGCAUUGCAAUGAGCAGCGAUA-GCAAAA-U-------GU-G .((((.((.(((((((((((((...(((((.(((((....))))).....(((......))))))))...)))))).))))))).))))))..((....-))....-.-------..-. ( -28.00) >DroVir_CAF1 2585 108 - 1 UCUUACUUUCAAUGUCAUCAAAAAGGGCUGA-GAAUGAUAUAUCUGCAAUUGAAUCGUAUCACAGCCAGCUUUGAUGGGCAUUGCAAAGGGCAACG-UA-GCAGAAAA-------GU-A (((..(((((((((((((((((...(((((.-(((((((.((........)).))))).)).)))))...)))))).))))))).)))).((....-..-)))))...-------..-. ( -31.00) >DroGri_CAF1 2726 109 - 1 UCUUACUUUCAAUGUCAUCAAAAAGGGCUGA-GAAUGAUAUAUCUGCAAUUGAAUCGUAUCACAGCCAGCUUUGAUGGGCAUUGCAAAGGGCAAUG-UA-GCAAAAAGA------GU-A ...((((((...((((((((((...(((((.-(((((((.((........)).))))).)).)))))...))))))).(((((((.....))))))-).-)))...)))------))-) ( -32.60) >DroWil_CAF1 2895 110 - 1 UCUUACUUUCAAUGUCAUCAAAAAGGGCUGAAGAAAGAUAUUUUUGCAUUUGAAGCGUAUCACAGCCAGCUUUGAUGGGCAUUGCAAUGAGCAUCGUUUUGCA-UU-U-------UUCC .........(((((((((((((...(((((.(((((....)))))((.......))......)))))...)))))).)))))))......(((......))).-..-.-------.... ( -26.20) >DroMoj_CAF1 2613 115 - 1 UCUUACUUUCAGUGUCAUCAAAAAGGGCUGA-GAAUGAUAUUUCUGUAAUUGAAUUGUAUCACAGCCAGCUUUGAUGGGCACUGCGAAGGGCGAAG-UA-ACAGUAACAUUAACAGU-A ..((((((((((((((((((((...(((((.-...(((((((((.......)))..)))))))))))...)))))).)))))))(....)..))))-))-)................-. ( -31.90) >DroAna_CAF1 2700 106 - 1 UCUUACUUUCAAUGUCAUCAAAAAGGGCUGAAGA--GAUAUUUCUGCAUUUGAAGUGUAUCACAGCCAGCUUUGAUGGGCAUUGCAAUAAGCCUAGAUU-CCG-AU-U-------GA-A (((..(((.(((((((((((((...(((((..((--.(((((((.......))))))).)).)))))...)))))).)))))))....)))...)))..-...-..-.-------..-. ( -29.40) >consensus UCUUACUUUCAAUGUCAUCAAAAAGGGCUGA_GAAUGAUAUUUCUGCAAUUGAAUCGUAUCACAGCCAGCUUUGAUGGGCAUUGCAAAGAGCAACG_UA_GCA_AA_U_______GU_A .....(((.(((((((((((((...(((((......((((((((.......)))..))))).)))))...)))))).)))))))....)))............................ (-22.65 = -22.18 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:50 2006