Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,240,782 – 11,240,902 |
Length | 120 |
Max. P | 0.755715 |
Location | 11,240,782 – 11,240,902 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.89 |
Mean single sequence MFE | -45.02 |
Consensus MFE | -42.33 |
Energy contribution | -42.67 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.79 |
Structure conservation index | 0.94 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.755715 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11240782 120 - 27905053 UAUCGGGCCGGCUGUUAUCAACGGCUGACCCGUGGCCGCGGAUGCCGAUACGUGCAUCUGCGAUGCGGCCAUUGGAGCUGCAAGGGAUCAGAUAAUAUUUUUAGCGCACAAUUUCGACAU ..(((((.(((((((.....))))))).)))((((((((((((((((...)).))))))))).(((((((....).)))))).....................)).)))......))... ( -45.40) >DroSim_CAF1 1 120 - 1 UAUCGGGCCGGCUGUUAUCAACGGCUGACCCGUGGCCGCGGAUGCCGAUACGUGCAUCUGCGAUGCGGCCAUUGGAGCUGCAAGAGAUCAGAUAAUAUUAUUAACGCACAAUUUCCACAU ....(((.(((((((.....))))))).)))((((.(((((((((((...)).))))))))).(((((((....).))))))................................)))).. ( -45.20) >DroYak_CAF1 1 120 - 1 UAUCGGGCCGGCUGUUAUCAACGGCUGACCCGUGGCCGCGGAUGCCGAUACGUGCAUCUGCGAGGCGGCCAUUGGAGCUGCGGGAGAUCAGAUCAUAUAAUUAGCGCACAAUUUCCAGAC ...((((.(((((((.....))))))).))))(((((((((((((((...)).)))))).....)))))))((((((.((((......................))))....)))))).. ( -44.45) >consensus UAUCGGGCCGGCUGUUAUCAACGGCUGACCCGUGGCCGCGGAUGCCGAUACGUGCAUCUGCGAUGCGGCCAUUGGAGCUGCAAGAGAUCAGAUAAUAUUAUUAGCGCACAAUUUCCACAU ....(((.(((((((.....))))))).)))((((((((((((((((...)).)))))))))..((((((....).)))))......................)).)))........... (-42.33 = -42.67 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:43 2006