Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,238,904 – 11,239,001 |
Length | 97 |
Max. P | 0.720915 |
Location | 11,238,904 – 11,239,001 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 80.29 |
Mean single sequence MFE | -51.88 |
Consensus MFE | -35.62 |
Energy contribution | -35.52 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.26 |
Mean z-score | -1.54 |
Structure conservation index | 0.69 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.720915 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11238904 97 + 27905053 --------AAGUGGCGGCGGGUCGGGCCAAGGCGGCUCCACGCAGUCGACGGCAGCACUUAUGCUAGCCGGCGGCCUGAAGGGCGUGGGUCCGGCCCCCUCAGCA --------..((.(.((.((((((((((...(((.(((....((((((.((((((((....)))).)))).))).)))..)))))).)))))))))))).).)). ( -49.50) >DroPse_CAF1 10469 105 + 1 GGGGUCAUUAGUGGCGGCGGGGCUGGCCAGGGUGGCGCUACGCAGUCGGCUGCAGUUCUCUUGCUUGCAGGCGGCCUGAAGGCCUCUGGGCCAGCCUCGUCCGCC ............((((((((((((((((.(((.(((.((...((((((.(((((((......)).))))).))).))).)))))))).))))))))))).))))) ( -60.50) >DroSec_CAF1 9987 97 + 1 --------AAGUGGCGGCGGGUCGGGCCAAGGCGGCUCCACGCAGUCGACGGCAGCACUUAUGCUGGCCGGCGGCCUGAAGGGCGUGGGUCCGGCCCCCUCAACA --------..((.(.((.((((((((((...(((.(((....((((((.((((((((....)))).)))).))).)))..)))))).)))))))))))).).)). ( -49.20) >DroEre_CAF1 10334 97 + 1 --------AAGUGGCGGCGGGUCGGGCCAAGGCGGCUCCACGCAGUCGACGGCAGCACUUAUGCUGGCCGGCGGCCUGAAGUUCGUGGGUCAGGCCCCCUCAGCA --------..((.(.((.(((((..((....))(((.(((((((((((.((((((((....)))).)))).))).))).....)))))))).))))))).).)). ( -43.80) >DroYak_CAF1 11327 97 + 1 --------AAGUGGCGGUGGGUCGGGCCAAGGCGGCUCCACGCAGUCGACGGCAGCACUUAUGCUGGCCGGCGGCCUGAAGUUUGCGGGUCCGGCCCCCUCAGCA --------..((.(.((.((((((((((...(((......))).((((.((((((((....)))).)))).))))............)))))))))))).).)). ( -47.80) >DroPer_CAF1 10548 105 + 1 GGGGUCAUCAGUGGCGGCGGGGCUGGCCAGGGUGGCGCUACGCAGUCGGCUGCAGUUCUCUUGCUUGCAGGCGGCCUGAAGGCCUCUGGGCCAGCCUCGUCCGCC ............((((((((((((((((.(((.(((.((...((((((.(((((((......)).))))).))).))).)))))))).))))))))))).))))) ( -60.50) >consensus ________AAGUGGCGGCGGGUCGGGCCAAGGCGGCUCCACGCAGUCGACGGCAGCACUUAUGCUGGCCGGCGGCCUGAAGGCCGCGGGUCCGGCCCCCUCAGCA ............((.(((...(((((((...(((......)))....(.(((((((......))).)))).)))))))).((((....)))).)))))....... (-35.62 = -35.52 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:42 2006