Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,536,964 – 1,537,054 |
Length | 90 |
Max. P | 0.737574 |
Location | 1,536,964 – 1,537,054 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 80.76 |
Mean single sequence MFE | -24.33 |
Consensus MFE | -17.28 |
Energy contribution | -17.95 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.05 |
Mean z-score | -1.58 |
Structure conservation index | 0.71 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.737574 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1536964 90 + 27905053 GACGAACUUGGUUCGCCACAAAAGCAGAAGAAGGAGAAGACACCUUUUUUUGAGCAGUUGCGUCAGCAGCAG------------CAACAGCAUCGC---------CUCAAC (.(((((...))))).).......((((((((((........)))))))))).((.(((((....))))).(------------(....))...))---------...... ( -23.50) >DroPse_CAF1 37771 87 + 1 GACGAACAUGGUUCGCCACAAAAACAGAAGAAGGAGAAGACACCUUUUUUUGAGCAGCUGCGUCAGCAGCAG---------------CAGCACCGC---------AUGAAU ......((((....((........((((((((((........)))))))))).((.(((((....))))).)---------------).))....)---------)))... ( -26.40) >DroEre_CAF1 38030 96 + 1 GACGAACUUGGUUCGCCACAAAAGCAGAAGAAGGAGAAGACACCUUUUUUUGAGCAGUUGCGUCAGCAGCAGCAACA------UCAACAGCAUCGC---------CUCAAC .........(((..((........((((((((((........)))))))))).((.(((((....))))).))....------......))...))---------)..... ( -23.10) >DroMoj_CAF1 39573 108 + 1 GACGAACAUGGUUCGCCCCAAAAGCAGAAGAAGGAGAAGACACCUUUUUUUGAGCAACUGCGCCACCAGCAACAACA---ACUGCAGCAGCAGCGUAACACACACAGUAAU .(((....((((.(((........((((((((((........)))))))))).......)))..)))).........---.((((....)))))))............... ( -23.56) >DroAna_CAF1 36563 99 + 1 GACGAACAUGGUUCGCCACAAAAGCAGAAGAAGGAGAAGACACCUUUUUUUGAGCAGCUCCGACAACAACAGCA---GCAGCUCCAACAGAACCGC---------CUCAAC ...((...((((((((.......))(((((((((........)))))))))((((.(((.(..........).)---)).)))).....)))))).---------.))... ( -23.00) >DroPer_CAF1 39210 87 + 1 GACGAACAUGGUUCGCCACAAAAACAGAAGAAGGAGAAGACACCUUUUUUUGAGCAGCUGCGUCAGCAGCAG---------------CAGCACCGC---------AUGAAU ......((((....((........((((((((((........)))))))))).((.(((((....))))).)---------------).))....)---------)))... ( -26.40) >consensus GACGAACAUGGUUCGCCACAAAAGCAGAAGAAGGAGAAGACACCUUUUUUUGAGCAGCUGCGUCAGCAGCAG____________CAACAGCACCGC_________AUCAAC (.(((((...))))).).......((((((((((........))))))))))....(((((....)))))......................................... (-17.28 = -17.95 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:33 2006