Locus 4119

Window 0

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11235625 95 + 27905053
---------------CCAUU---CCCCACC-CCUGUC---CUCCUGCUGCUGCGCCCUUAAAAUUUUCAAUUGAAAUAUGACUGCAGCGCACACAGGCACAGCCACAAACGCAGCCA
---------------.....---.......-......---.....((((((((((.........((((....))))..........)))))....(((...)))......))))).. ( -19.71)
>DroSec_CAF1 6765 98 + 1
GCCGUAGCCU---UCCCAUU---CCUCUCC-CCUGUCCUCCUCCUUCUGCUGCGCCCUUAAAAUUUUCAAUUGAAAUAUGACUGCAGCGCACACAGUCACAGC------------CA
((((((((..---.......---...(...-...).............))))))..........((((....))))..((((((.........))))))..))------------.. ( -12.21)
>DroSim_CAF1 8044 113 + 1
GCCGUAGCCGUCGUCCCACU---CCCCACC-CCUCUUCUCCUCCUGCUGCUGCGCCCUUAAAAUUUUCAAUUGAAAUAUGACUGCAGCGCACACAGUCACAGCCACAAACGCAGCCA
...((((.............---.......-............)))).((((((..........((((....))))..((((((.........))))))..........)))))).. ( -17.15)
>DroEre_CAF1 7070 80 + 1
---------------------------UCC-CCUU---UCCUCCUGCUGCUGCGCCCUUAAAAUUUUCAAUUGAAAUAUGACUGCAGCGCACACA------GCCACAAACGCAACCA
---------------------------...-....---.......((((.(((((.........((((....))))..........)))))..))------)).............. ( -13.41)
>DroYak_CAF1 8062 81 + 1
---------------------------UCCACCCU---UCCUCCUGCUGCUGCGCCCUUAAAAUUUUCAAUUGAAAUAUGACUGCAGCGCACACA------GCCACAAACGCAGCCA
---------------------------........---.....((((.((((((..(.......((((....))))...)..))))))((.....------)).......))))... ( -14.80)
>DroAna_CAF1 6714 90 + 1
GUC-------------CACUUUUUUGCGCC-CCAAUGUUUGCGCUGCUGCUGCGCCCUUAA-AUUUUCAAUUGAAAUAUGACUGCAGUGCACACAUCCACAUCCA------------
...-------------..............-...((((.((((((((.((...))......-..((((....)))).......)))))))).)))).........------------ ( -16.40)
>consensus
________________CA_U___CC_CUCC_CCUGU__UCCUCCUGCUGCUGCGCCCUUAAAAUUUUCAAUUGAAAUAUGACUGCAGCGCACACAG_CACAGCCACAAACGCAGCCA
............................................(((.((((((..(.......((((....))))...)..))))))))).......................... (-10.44 = -10.47 +   0.03) 

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Window 1

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11235643 94 + 27905053
---CUCCUGCUGCUGCGCCCUUAAAAUUUUCAAUUGAAAUAUGACUGCAGCGCACACAGGCACAGCCACAAACGCAGCCACACAACAACAUUCACAU-----------
---.....((((((((((.........((((....))))..........)))))....(((...)))......)))))...................----------- ( -19.71)
>DroSec_CAF1 6795 85 + 1
CUCCUCCUUCUGCUGCGCCCUUAAAAUUUUCAAUUGAAAUAUGACUGCAGCGCACACAGUCACAGC------------CACACAUCAACAUUCACAU-----------
...........((((............((((....))))..((((((.........))))))))))------------...................----------- ( -11.30)
>DroSim_CAF1 8077 97 + 1
CUCCUCCUGCUGCUGCGCCCUUAAAAUUUUCAAUUGAAAUAUGACUGCAGCGCACACAGUCACAGCCACAAACGCAGCCACACAUCAACAUUCACAU-----------
.......((..((((((..........((((....))))..((((((.........))))))..........))))))..))...............----------- ( -17.30)
>DroEre_CAF1 7077 90 + 1
-UCCUCCUGCUGCUGCGCCCUUAAAAUUUUCAAUUGAAAUAUGACUGCAGCGCACACA------GCCACAAACGCAACCACACAUCAACAUCCACAU-----------
-.......((((.(((((.........((((....))))..........)))))..))------))...............................----------- ( -13.41)
>DroYak_CAF1 8070 101 + 1
-UCCUCCUGCUGCUGCGCCCUUAAAAUUUUCAAUUGAAAUAUGACUGCAGCGCACACA------GCCACAAACGCAGCCACACAUCAACAUCCACAUCCACAUCCAUA
-.....((((.((((((..(.......((((....))))...)..))))))((.....------)).......))))............................... ( -14.80)
>DroAna_CAF1 6737 81 + 1
UUUGCGCUGCUGCUGCGCCCUUAA-AUUUUCAAUUGAAAUAUGACUGCAGUGCACACAUCCACAUCCA--------------CAUCCACA-UCACAU-----------
..((((((((.((...))......-..((((....)))).......))))))))..............--------------........-......----------- ( -13.00)
>consensus
_UCCUCCUGCUGCUGCGCCCUUAAAAUUUUCAAUUGAAAUAUGACUGCAGCGCACACAG_CACAGCCACAAACGCAGCCACACAUCAACAUUCACAU___________
.......(((.((((((..(.......((((....))))...)..)))))))))...................................................... (-10.44 = -10.47 +   0.03) 

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Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:41 2006