Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,229,284 – 11,229,382 |
Length | 98 |
Max. P | 0.839121 |
Location | 11,229,284 – 11,229,382 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 79.56 |
Mean single sequence MFE | -23.90 |
Consensus MFE | -17.45 |
Energy contribution | -16.70 |
Covariance contribution | -0.75 |
Combinations/Pair | 1.36 |
Mean z-score | -1.61 |
Structure conservation index | 0.73 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.839121 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11229284 98 + 27905053 ACCCAGCUAAAGAAGUCCUUUUUGUUGGUCUGCCAUAGCUCCUUAACUGGAGCAAGAUCAAUCUGUUUGAAAGGAAAAGUAUAUGAUUAACUACAUUU ...............(((((((.((((((((......(((((......))))).))))))))......)))))))....................... ( -21.30) >DroPse_CAF1 537 95 + 1 ACCCAGCUGAAGAAAUCCUUUUUGUUGGUCUGCCACAGCUCCCUCACGGGGGCCACAUCAAUCUGUG-GA-AUUAUAAAUAUAUA-UAUGAUAUGUGA ..(((((.((((.....))))..))))).....((((((((((....))))))((((......))))-..-((((((........-)))))).)))). ( -25.30) >DroSim_CAF1 1738 98 + 1 ACCCAGCUGAAGAAGUCCUUCUUGUUGGUCUGCCAAAGCUCCUUAACUGGAGCAAGAUCAAUCUGUUUGAAACAAAAAGUAUAUAAUUAGCUACAUUU ....((((((..(.((.(((.(((((((....))...(((((......)))))....((((.....))))))))).))).)).)..))))))...... ( -23.00) >DroEre_CAF1 535 98 + 1 ACCCAACUGAAGAAGUCCUUCUUGUUGGUCUGCCAAAGUUCCUUAACGGGUGCCAGAUCAAUCUGUUUGAAGGGGAAAGUAUAUACCUAAGUAUAUUU .(((....((((.....))))..(((((((((.((..(((....)))...)).))))))))).........)))..((((((((......)))))))) ( -23.20) >DroYak_CAF1 1809 98 + 1 ACCCAACUGAAGAAGUCCUUCUUGUUGGUCUGCCAGAGCUCCUUAACCGGAGCAAGAUCAAUCUGUUUACCAGGGAAAGCAUCAAAUUAGGUACAUUC ..(((((.((((.....))))..)))))..((((...(((((......)))))..........(((((.(....).)))))........))))..... ( -25.30) >DroPer_CAF1 519 96 + 1 ACCCAGCUGAAGAAAUCCUUUUUGUUGGUCUGCCACAGCUCCCUCACGGGGGCCACAUCAAUCUGUGGGA-AUUAUAAAUAUAUA-UAUGAUAUGUGA ..(((((.((((.....))))..))))).....((((((((((....))))))((((......))))...-((((((........-)))))).)))). ( -25.30) >consensus ACCCAGCUGAAGAAGUCCUUCUUGUUGGUCUGCCAAAGCUCCUUAACGGGAGCAAGAUCAAUCUGUUUGAAAGGAAAAGUAUAUAAUUAGAUACAUUU ..(((((.((((.....))))..))))).........(((((......)))))............................................. (-17.45 = -16.70 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:38 2006