Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,227,774 – 11,227,886 |
Length | 112 |
Max. P | 0.781626 |
Location | 11,227,774 – 11,227,886 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.76 |
Mean single sequence MFE | -32.72 |
Consensus MFE | -26.34 |
Energy contribution | -26.34 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.59 |
Structure conservation index | 0.80 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.781626 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11227774 112 - 27905053 UUAACGGCUUCGGUGGAUGCCGAAGUUAGGCUUGUAGAUUGUAAUUGUAGUUCCGAUGUGGCUGAAUAAUAAUACAGUGACUUGAUUGU--------AAGAUUUAAAUCAGUUACGUGGG .....(((((((((....))))))))).........................((.((((((((((..(((..((((((......)))))--------)..)))....)))))))))).)) ( -31.70) >DroSim_CAF1 294 112 - 1 UAAACGGCUUCGGUGGAUGCCGAAGUUAGGCUUGUAGAUUGUAAUUGUAGUUCCGAUGUGGCUGAAUAAUAAUACAGUGACUUGAUUGU--------AAGAUUUAAAUCAGUUACGUGGG .....(((((((((....))))))))).........................((.((((((((((..(((..((((((......)))))--------)..)))....)))))))))).)) ( -31.70) >DroYak_CAF1 286 117 - 1 AGAACGGCUUCGGUGGAUGCCGAAGUUAGGCUUGUAGAUUGUAAUUGUCGUUCCGAUGUGGCUGAAU---AAUACAGUGACUUGAUUGUAAGAUUGUAAGAUUUAAAUCAGUUACGUGGG .(((((((((((((....))))))))).(((...............)))))))(.((((((((((..---..((((((......))))))(((((....)))))...)))))))))).). ( -34.76) >consensus UAAACGGCUUCGGUGGAUGCCGAAGUUAGGCUUGUAGAUUGUAAUUGUAGUUCCGAUGUGGCUGAAUAAUAAUACAGUGACUUGAUUGU________AAGAUUUAAAUCAGUUACGUGGG .....(((((((((....))))))))).........................((.((((((((((........(((((......)))))..................)))))))))).)) (-26.34 = -26.34 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:35 2006