Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,532,033 – 1,532,127 |
Length | 94 |
Max. P | 0.549798 |
Location | 1,532,033 – 1,532,127 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 89.90 |
Mean single sequence MFE | -30.75 |
Consensus MFE | -24.09 |
Energy contribution | -24.65 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -1.47 |
Structure conservation index | 0.78 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.549798 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1532033 94 + 27905053 CGAGCAGACAUUGCGUCGGCAUGAGCACUGAACAUGUUCACCGUGAGUCACCACCAAGUAUCCCAGUUUUAUCUCGGUUUACUGGUGACUUAUU----- ...((.(((.....))).)).((((((.......))))))..(((((((((((....(((..((((......)).))..)))))))))))))).----- ( -29.00) >DroSec_CAF1 33611 99 + 1 CGGGCAGACAUUGCGUCGGCAUGAGCACUGAACAUGUUCACUGUGAGUCACCGCCAAGUAUCCCAGUUUUAUCUCGGUUUGCGGGUGACUUAUUGCCCC .((((((((.....))).(((((((((.......)))))).)))((((((((.....(((..((((......)).))..))).))))))))..))))). ( -34.10) >DroSim_CAF1 31873 99 + 1 CGGGCAGACAUUGCGUCGGCAUGAGCACUGAACAUGUUCACCGUGAGUCACCGCCAAGUAUCCCAGUUUUAUCUCGGUUUGCGGGUGACUUAUUGCCCC .((((((((.....)))((..((((((.......))))))))((((((((((.....(((..((((......)).))..))).))))))))))))))). ( -35.50) >DroEre_CAF1 33044 94 + 1 --AGCAGACAUUGCGUCGGCAUGAGCACUGAACAUGUUCACUGUGAGUCAC---GAAGUAUCCCAGUUUUAUCUCGCUACGCGGGUGACUUAUUGCCUC --....(((.....)))((((((((((.......))))))..(((((((((---((....))...........((((...))))))))))))))))).. ( -24.40) >consensus CGAGCAGACAUUGCGUCGGCAUGAGCACUGAACAUGUUCACCGUGAGUCACCGCCAAGUAUCCCAGUUUUAUCUCGGUUUGCGGGUGACUUAUUGCCCC ...((.(((.....))).)).((((((.......))))))..((((((((((.....(((..((((......)).))..))).))))))))))...... (-24.09 = -24.65 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:32 2006