Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,205,622 – 11,205,712 |
Length | 90 |
Max. P | 0.962169 |
Location | 11,205,622 – 11,205,712 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 74.67 |
Mean single sequence MFE | -26.22 |
Consensus MFE | -15.50 |
Energy contribution | -15.58 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.29 |
Mean z-score | -2.07 |
Structure conservation index | 0.59 |
SVM decision value | 1.54 |
SVM RNA-class probability | 0.962169 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11205622 90 - 27905053 GGCAACAUCUAUAGGUGGAUGAGCAUCUUGUUGCUUGGAAACAGGUGA---UACC------UUUAAACUAUCUACAGGAAAAG---------UGGGUUCUUAUAAGCU .....((((((....))))))(((....(((..((((....))))..)---))..------........((((((.......)---------)))))........))) ( -22.70) >DroSec_CAF1 7672 90 - 1 GGCAACUUCUAUAGGUGGAUGAGCAUCUUGUUGCUUGAAAACAUGUGA---UACU------UUUAUUCUAUCUAUUAGAAAAU---------UGGGUUCUUUAGAACU (....)(((((((((((((.(((.(((.((((.......))))...))---).))------)....)))))))).)))))...---------..(((((....))))) ( -21.50) >DroSim_CAF1 7907 99 - 1 GGCAACUUCUAUAGGUGGAUGAGCAUCUUGUUGCUUGAAAACAGGUAAAGGUACUAAAGGUAUCAGUCUAUCCACUAGAAAAU---------UGGGUUCUUUAGAGCU (....)((((...((((((((..(......(((((((....))))))).(((((.....))))).)..))))))))))))...---------..(((((....))))) ( -28.10) >DroEre_CAF1 12769 99 - 1 GGCAACUUAUAUAGGUGGAUGAGCACCGUGUUGCUUGGAUACAGCUAA---UACC------UUAAGUCUAUCUACAGGACUCUAUCCAUCUACAGGUUCUUUAGAGCU (....).....((((((((((......((((((((.(....)))).))---))).------...(((((.......))))).))))))))))..(((((....))))) ( -25.10) >DroYak_CAF1 8073 99 - 1 GGCAACUUCUAUAGGUGGAUAAGCACCGUGUUGCUUGGAUACAGGUGA---UACC------CCUAGUCCACCUACAGGAAUCUAUCUAUCCACAGGUUCUUUAGAGCU (((...((((.(((((((((.((....((((..((((....))))..)---))).------.)).))))))))).)))).((((.....((...)).....))))))) ( -33.70) >consensus GGCAACUUCUAUAGGUGGAUGAGCAUCUUGUUGCUUGGAAACAGGUGA___UACC______UUUAGUCUAUCUACAGGAAAAU_________UGGGUUCUUUAGAGCU (....).....((((((((((((((......))))).......((((....))))..........)))))))))....................(((((....))))) (-15.50 = -15.58 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:12 2006