Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,204,785 – 11,204,877 |
Length | 92 |
Max. P | 0.907091 |
Location | 11,204,785 – 11,204,877 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 87.07 |
Mean single sequence MFE | -25.14 |
Consensus MFE | -20.96 |
Energy contribution | -19.56 |
Covariance contribution | -1.40 |
Combinations/Pair | 1.42 |
Mean z-score | -1.87 |
Structure conservation index | 0.83 |
SVM decision value | 1.05 |
SVM RNA-class probability | 0.907091 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11204785 92 - 27905053 AGAGAAUGAGUUCGCGCAUGAGCAGAGGACACUUACUGUUAACAGAGCUGUUACCGUUAAGCUACUCUGCUAAUUGUUAACAUUUCACACUA ...(((...(((.(((....(((((((....((((.((.(((((....))))).)).))))...)))))))...))).)))..)))...... ( -22.80) >DroSec_CAF1 6887 92 - 1 AGAGAAUGAGUUCGCGCAUGUGCAGAGGACACGUACUGUUAACAGAGCUGUUACCGUUACGCUACUCUGCUAAUUGUUAACAUUUCACACUA ...(((...(((.(((.....((((((....((((.((.(((((....))))).)).))))...))))))....))).)))..)))...... ( -22.40) >DroSim_CAF1 7102 92 - 1 AGAAAAUGAGUUCGCGCAUGUGCAGAGGACACGUACCGUUAACAGAGCUGUUACCGUUACGCUACUCUGCAAAGUGUUAACAUUGCACACUA .........(((.((((...(((((((....((((.((.(((((....))))).)).))))...)))))))..)))).)))........... ( -28.60) >DroEre_CAF1 11983 88 - 1 AGAGAACGAGUUCACGCAUGUGCAGAGAAUAUGUACUGUUAGCAGAGCUAUUACUGUUGUGCUGCUCUGUUAAGCGUUAACAUUUCAC---- ...(((...(((.((((..(((((.......)))))..((((((((((...(((....)))..)))))))))))))).)))..)))..---- ( -28.30) >DroYak_CAF1 7270 92 - 1 AGAGAACGAGUUCGCGCAUGUGCAGAGGAUAUGUACUGUUAACAGAGCUGUUACCGUUAUGCCACUCUGUUAAGCGUUAACAUUUCACAAUA ...(((...(((.((((..(((((.......)))))..(((((((((..((.........))..))))))))))))).)))..)))...... ( -23.60) >consensus AGAGAAUGAGUUCGCGCAUGUGCAGAGGACACGUACUGUUAACAGAGCUGUUACCGUUACGCUACUCUGCUAAGUGUUAACAUUUCACACUA .........(((.((((....((((((....((((.((.(((((....))))).)).))))...))))))...)))).)))........... (-20.96 = -19.56 + -1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:11 2006