Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,187,216 – 11,187,328 |
Length | 112 |
Max. P | 0.788376 |
Location | 11,187,216 – 11,187,328 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 77.10 |
Mean single sequence MFE | -29.87 |
Consensus MFE | -19.36 |
Energy contribution | -19.67 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.38 |
Mean z-score | -1.49 |
Structure conservation index | 0.65 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.788376 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11187216 112 - 27905053 ----ACAAAUA-AUUA--AAUUCCAGCCCUAAGGCAAUGCAUGAUCCGGUCAAAAAGUCGGCUCACUUGACCGCUGGCUCCACCAGCACAGCGGAGAAGCUGUGCUUCGACAAGAAUGA ----.......-....--.......(((....)))......(((.((((........)))).)))((((.(((((((((.....))).)))))).(((((...)))))..))))..... ( -32.80) >DroGri_CAF1 21379 109 - 1 AUACACAAAUAUAUUAAGAAUUCGAGC----ACGCAAUGCACGAGCCAGCGAGAAAGCCA-UC--CGUAG---CUGGUGGGUCGAGCACGGCAGAGAAGCUGUGCUUUGAUAAAAAUGA .....................(((.((----(.....))).)))((((((..((......-))--....)---)))))..((((((((((((......))))))).)))))........ ( -30.30) >DroSec_CAF1 18510 112 - 1 ----ACAAAUA-AUUA--AAUUCCAGCCCUAAGGCAAUGCAUGAUCCGGUCAAGAAGUCGGCUCACUUGACCGCUGGCUCCACCAGCACAGCGGAGAAGCUGUGCUUCGACAAGAAUGA ----.......-....--...(((.(((....)))...((.((....(((((((.((....))..)))))))(((((.....))))).)))))))(((((...)))))........... ( -34.30) >DroEre_CAF1 17496 112 - 1 ----AAAAACA-AUUA--AAUUACAGCCCGAAGGCAAUGCAUGAUCCGGGCAAGAAGUCGGCUCACUUGACCGCCGGUUCCACCAGCACAGCGGAGAAGCUGUGCUUCGACAAGAAUGA ----.......-....--.......(((((....((.....))...))))).....((((((((....))..)))((.....))((((((((......))))))))..)))........ ( -32.70) >DroYak_CAF1 17318 112 - 1 ----ACAAAUA-AUUU--AAUUCCAGCUCUAAGGCAAUGCAUGAUCCGGUCAAGAAGUCAGCUCACUUGACCGCUGGCUCCACCAGCACAGCGGAGAAACUGUGCUUCGACAAGAAUGA ----.......-....--.((((..(((....)))...(((((.((((((((((.((....))..)))))))(((((((.....))).))))))).....)))))........)))).. ( -29.80) >DroAna_CAF1 17532 108 - 1 ----UUAUUAA-AUUU--AAUUGACGACCUCA-GCAAUGCAUGACACCGCCAUCAAGCCGGUUCACCUAC---CUGGCUCCACCAGCACCGCCGAAAAGUUGUGCUUUGACAAGAAUGA ----(((((..-..((--((...(((((.((.-((..(((.(((........)))(((((((......))---).))))......)))..)).))...)))))...))))....))))) ( -19.30) >consensus ____ACAAAUA_AUUA__AAUUCCAGCCCUAAGGCAAUGCAUGAUCCGGUCAAGAAGUCGGCUCACUUGACCGCUGGCUCCACCAGCACAGCGGAGAAGCUGUGCUUCGACAAGAAUGA .........................(((....)))...........(((......(((((((..........))))))).....((((((((......))))))))))).......... (-19.36 = -19.67 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:59 2006