Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,176,959 – 11,177,055 |
Length | 96 |
Max. P | 0.600960 |
Location | 11,176,959 – 11,177,055 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 80.14 |
Mean single sequence MFE | -15.28 |
Consensus MFE | -9.44 |
Energy contribution | -9.63 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.21 |
Mean z-score | -1.60 |
Structure conservation index | 0.62 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.600960 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11176959 96 + 27905053 AGGGGGUGUUUGGACAAAAACACAACAA--AAAAUGUAUACAAAACAAUUCC--GAUUAAAAUUCGCAGAAUAAGUGAAUUAAAC-UUGAACAAUUGACAA ..(..((((((......))))))..)..--...............(((((.(--((....(((((((.......)))))))....-)))...))))).... ( -14.60) >DroPse_CAF1 12936 96 + 1 UGUGGGUGG-----GAGAGCCACAACAAAAAAAAUGUAUACAAACCGCCGCAAACAGUAAAUUUCCAUUAAAAAGUGAAUUAAAGCUCGCAAAAAUAUCAA (((((((((-----.....)))).(((.......)))..........)))))......................((((........))))........... ( -13.90) >DroSec_CAF1 8293 96 + 1 AGGGGGUGUUUGGACAAAAACACAACAA--AAAAUGUAUACAAAACAACUCC--GAUUGAAAUUCGCAGAAUAAGUGAAUUAAAC-UUGAACAAUUGACAA .((((((((((......)))))).(((.--....)))...........))))--......(((((((.......)))))))....-............... ( -16.80) >DroSim_CAF1 7982 96 + 1 AGGGGGUGUUUGGACAAAAACACAACAA--AAAAUGUAUACAAAACAACUCC--GAUUAAAAUUCGCAGAAUUAGUGAAUUAAAC-UUAAAAAAUUGACAA .((((((((((......)))))).(((.--....)))...........))))--......(((((((.......)))))))....-............... ( -16.80) >DroEre_CAF1 7119 96 + 1 AGGGGGUGUUUGGCCAGAAACACAACAA--AAAAUGUAUACAAAAGAACUCC--GAUUAAAAUUCGCAAAUUAAGUGAAUUAAAC-UUGACUAAACGUUAA .((((((((((......)))))).(((.--....)))...........))))--......(((((((.......)))))))....-.((((.....)))). ( -16.90) >DroYak_CAF1 6970 96 + 1 AGGGGGUGUUUGGCCAGAAGCACAACAA--AAAAUGUAUACAAAACAACUCG--GAUUAAAAUUCGCGAAAUACUUGAAUUAAAC-UUGACCAAACGAGAA ...((((((((.((..........(((.--....)))..............(--(((....)))))).))))))))........(-(((......)))).. ( -12.70) >consensus AGGGGGUGUUUGGACAAAAACACAACAA__AAAAUGUAUACAAAACAACUCC__GAUUAAAAUUCGCAGAAUAAGUGAAUUAAAC_UUGAACAAAUGACAA .(((.((((((......)))))).(((.......)))...........))).........(((((((.......))))))).................... ( -9.44 = -9.63 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:58 2006