Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,166,638 – 11,166,735 |
Length | 97 |
Max. P | 0.661943 |
Location | 11,166,638 – 11,166,735 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 73.95 |
Mean single sequence MFE | -30.67 |
Consensus MFE | -19.30 |
Energy contribution | -20.47 |
Covariance contribution | 1.17 |
Combinations/Pair | 1.25 |
Mean z-score | -1.27 |
Structure conservation index | 0.63 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.661943 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11166638 97 + 27905053 GAGGCCCC--A----AUACACAGACCGGUUCCAACCAGUGCCCAGCUGGACGAACUGGAGCGGAACGUGGUUGUGCGCCACCACAAGAACAACGUGCCACUGA ........--.----.....(((.(((((((...(((((.....)))))..)))))))...((.(((((.(((((......)))))...).)))).)).))). ( -29.20) >DroVir_CAF1 8765 103 + 1 CAGGCACAUGACGCAGCUGACGAACCGGCGCUAACCAGUGCACAGCUGGAUGAGCUGGAGCAGAAUGUGCAAUUGCGACAGCACAAGAACAAUGUGCCACGCA ..(((((((....((((((.((...))(((((....))))).))))))..((.((((..((((.........))))..)))).))......)))))))..... ( -37.70) >DroEre_CAF1 7560 97 + 1 GUGACUCC--A----AAACUCAGACCGGUUCCAACCAGUGCCCAGCUGGACGAACUGGAGCGGAAUGUGGUUGUGCGCCAUCACAAGAACAACAUGCCACUGA ........--.----....((((.(((((((...(((((.....)))))..))))))).(((...(((..(((((......)))))..)))...)))..)))) ( -29.20) >DroYak_CAF1 7516 97 + 1 GAGGCUCC--A----ACACCCAGACCGGUUCCAACCAGUGCCCAGCUGGAUGAACUGGAGCGGAAUGUGGUUAUGCGACACCACCGGAACAACGUGCCACAGA ..((((((--.----....((...(((((((...(((((.....)))))..)))))))...))...(((((........))))).))).......)))..... ( -29.61) >DroMoj_CAF1 7650 97 + 1 GAGGC----GGCGCA--UGAUCAACCGGCAAUAACCAGUGCACAGCUGGAUGAGCUGGAACGGAAUGUGCUCAUGCGCCAUCACAGGAACAAUAUACCACGCA ...((----((((((--(((.((.((((((........))).(((((.....)))))...)))....)).)))))))))......((.........))..)). ( -34.10) >DroAna_CAF1 7839 94 + 1 GAUCCGCC--A----AGGC---AACCGGUUCCAACUAGUGCCCAGCUGGAUGAGCUGGAGCGGAAUGUGAAGCUGCGCCACCACAAAAACAACAUACCCCUCA ........--.----.(((---..(((((((...(((((.....)))))..))))))).((((.........)))))))........................ ( -24.20) >consensus GAGGCUCC__A____ACACACAAACCGGUUCCAACCAGUGCCCAGCUGGAUGAACUGGAGCGGAAUGUGGUUAUGCGCCACCACAAGAACAACAUGCCACUCA ..(((...................(((((((...(((((.....)))))..)))))))........(((((........)))))...........)))..... (-19.30 = -20.47 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:55 2006