Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,166,310 – 11,166,424 |
Length | 114 |
Max. P | 0.789843 |
Location | 11,166,310 – 11,166,424 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.90 |
Mean single sequence MFE | -30.64 |
Consensus MFE | -14.94 |
Energy contribution | -15.18 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.05 |
Mean z-score | -2.68 |
Structure conservation index | 0.49 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.789843 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11166310 114 + 27905053 UAGGGCUC--AAGUUUUGUUACG----UACUUAAUAGCGAGCGUUACGUUAUCAGCCCAAAUAAUGAAAAAGUUCGAUAAAUAAUCGAAAGUUAACAGAAUGUUAGCGGCUUUUACAAUU ..(((((.--..((..((((.((----(........)))))))..))......)))))......((.(((((((((((.....)))))..((((((.....)))))).)))))).))... ( -28.40) >DroSec_CAF1 7089 120 + 1 UAAGUAUCAAAAGUUUCGCUACGUAUGUACGUAACAGCGUGCGUUACGUUAUAAUCCGAAAUGUUGAAAAAGUUCGAUUUGUAAUCGAAAGUUAACAGAAUGUUAGCGGCUUUUACAAUU ............((((((..((((((((((((....))))))).))))).......))))))((((.(((((((((((.....)))))..((((((.....)))))).)))))).)))). ( -31.10) >DroSim_CAF1 6874 120 + 1 UAAGGCUCUAAAGUUUCGCUACGUAUGUACUUAACAGCCUGCGUUACGUUAUCAGCCGAAAUGUUGAAAAAGUUCGAUAAGUAAUCGAAAGUUAACAGAAUGUUAGCGGCUUUUACAAUU ...((((.(((.((..(((...((.(((.....)))))..)))..)).)))..)))).....((((.(((((((((((.....)))))..((((((.....)))))).)))))).)))). ( -28.10) >DroEre_CAF1 7234 115 + 1 UAAGGAUUGGAAGUUGCGUAGCG----UACGUAACAGCGAGCGUAACGUUAACACAUCAAACAAUGAA-GACUUCGAUAAAUAAUCGAAUGUUAACAGAAUGUUAGCGGCUUUUACAAUU ....(((((((((((((((.(((----(.(((....))).)))).))(((((((..(((.....))).-...((((((.....))))))))))))).........))))))))..))))) ( -31.40) >DroYak_CAF1 7187 115 + 1 UAAGGCUCCAAAGUUUCGUUACG----UACGUAGCAGCGUGCGUAACGUUAACACAUCAAACAUUGAA-GACUUCGAUAAAUAAUCGAAUGUUAACAGAAUGUUAGCGGCUUUUACAAUU .((((((..........((((((----(((((....)))))))))))(((((((..(((.....))).-(((((((((.....)))))).))).......)))))))))))))....... ( -34.20) >consensus UAAGGCUC_AAAGUUUCGUUACG____UACGUAACAGCGUGCGUUACGUUAUCACCCCAAAUAUUGAAAAAGUUCGAUAAAUAAUCGAAAGUUAACAGAAUGUUAGCGGCUUUUACAAUU ..............................((((.(((..................................((((((.....)))))).((((((.....)))))).))).)))).... (-14.94 = -15.18 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:54 2006