Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,162,090 – 11,162,210 |
Length | 120 |
Max. P | 0.719649 |
Location | 11,162,090 – 11,162,210 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.28 |
Mean single sequence MFE | -43.93 |
Consensus MFE | -27.35 |
Energy contribution | -28.05 |
Covariance contribution | 0.70 |
Combinations/Pair | 1.38 |
Mean z-score | -2.01 |
Structure conservation index | 0.62 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.719649 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11162090 120 - 27905053 GCGGUGAACCUACAAAGCCAGUGUACUGGCCAUACUGUGUGGAAUAGGCAGCAUUCAGCUGCUUGGAACCCCACAGAUAGUAAUGGGACAUUUGUGGCGGCUUCUCACGCUGAAUAGCCU ((((....))(((((((((((....)))))....(((((.((..((((((((.....))))))))...)).)))))..............))))))))((((..((.....))..)))). ( -45.20) >DroVir_CAF1 3573 120 - 1 GCGGUGCACCCACAAAGCCCGUAUACUGGCCAAACUGUGUGGAGUAUGCAGCAUUCAGCUGCUUUGAGCCCCAGAGAUAAUAAUGCGACAUCUGCGACGGUUUCUCACGCUGUAUGGCCU ((((.((.........)))))).....(((((.((.((((((..((.(((((.....)))))..))..))...((((.(((..((((.....))))...))))))))))).)).))))). ( -39.00) >DroGri_CAF1 3211 120 - 1 GUGGUGAUCCCACAAAGCCCGUAUACUGCCCAUACUGGGUGGUAUAAGCGGCAUUCAGCUGCUUUGAGCCCCACAGAUAGUAGUGGGACAUCUGGGGCGGCUUCUCCCGCUGAAUGGGCU ((((.....))))..(((((((((((..(((.....)))..)))).(((((.....(((((((((((..(((((........)))))...)).)))))))))....)))))..))))))) ( -56.00) >DroWil_CAF1 3080 120 - 1 GUGGGGCUCCCACAAAUCCUGUGUAUUGGCCAUAUUGCGUAGAAUAGGCGGCAUUUAGCUGCUUGGAACCCCAUAAAUAAUAAUGGGCCAUUUGUGGUGGCUUCUCGCGCUGAAUCGCCU (.(((((..((((((((.(((((((.((....)).)))))))..((((((((.....))))))))....(((((........)))))..))))))))..))))).)(((......))).. ( -39.70) >DroMoj_CAF1 3103 120 - 1 GUGGUGAGCCAACAAACCCAGUAUACUGGCCGUACUGUGUGGUAUAUGCAGCAUUCAGCUGCUUUGAGCCCCAUAGAUAAUAAUGCGACAUCUGAGGCGGCUUUUCGCGCUGUAUGGCCU .(((....)))................((((((((.((((((.....(((((.....)))))...(((((((.(((((...........))))).)).))))).)))))).)))))))). ( -44.60) >DroAna_CAF1 2994 120 - 1 GCGGCGCUCCCACGAAACCAGUGUAUUGGCCAUACUGGGUGGAGUAGGCGGCGUUCAACUGUUUAGAGCCCCAAAGAUAAUAAUGUGACAUUUGUGGGGGUUUCUCCCGUUGAAUGGCCU ..((((((((.((....(((((((.......))))))))))))))......((((((((.(...(((.(((((.((((...........)))).))))).)))...).))))))))))). ( -39.10) >consensus GCGGUGAUCCCACAAAGCCAGUAUACUGGCCAUACUGUGUGGAAUAGGCAGCAUUCAGCUGCUUUGAGCCCCACAGAUAAUAAUGGGACAUCUGUGGCGGCUUCUCACGCUGAAUGGCCU ..((....)).................((((((.(.((((((...(((((((.....))))))).(((((((.(((((...........))))).)).))))).)))))).).)))))). (-27.35 = -28.05 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:53 2006