Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,155,135 – 11,155,255 |
Length | 120 |
Max. P | 0.614169 |
Location | 11,155,135 – 11,155,255 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.44 |
Mean single sequence MFE | -48.27 |
Consensus MFE | -44.91 |
Energy contribution | -45.03 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.10 |
Mean z-score | -1.66 |
Structure conservation index | 0.93 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.614169 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11155135 120 - 27905053 ACUCGUCGAUCUUGGUCUUCAUUCCGCCAUAGAUGCGAUUGGACAGGAUGUUGCCGCAUUGUCCUGGCAGCGGCAGAAGGCUGUUGCUGGUUACAUUGGGCUUGGGCGGUGGCGUCGUCU .((.((((((((((((.........)))).)))).)))).))....(((((..((((...((((.(.(((((((((....))))))))).)......))))....))))..))))).... ( -48.80) >DroSim_CAF1 8041 120 - 1 ACUCGUCGAUCUUGGUCUUCAUUCCGCCGUAAAUGCGAUUGGACAGGAUGUUGCCGCAUUGUCCUGGUAGCGGCAGAAUGCUGUUGCUGGUUACAUUGGGCUUGGGCGGCGGCGGCGUCU ....((((((....))).......(((.......)))....))).((((((((((((...((((.(((((((((.....)))))))))((((......)))).)))).)))))))))))) ( -45.80) >DroYak_CAF1 8058 120 - 1 ACUCGUCGAUCUUGGUCUUCAUUCCGCCGUAGAUGCGAUUGGACAGGAUGUUGCCGCAUUGUCCUGGCAGCGGCAGCAGGUUGUUGCUGGUUACAUUUGGCUUGGGCGGCGGAGGCGUCU ...(((((((....))).....((((((.((((((..((..(((((..(((((((((..(((....))))))))))))..))))..)..))..))))))((....))))))))))))... ( -50.20) >consensus ACUCGUCGAUCUUGGUCUUCAUUCCGCCGUAGAUGCGAUUGGACAGGAUGUUGCCGCAUUGUCCUGGCAGCGGCAGAAGGCUGUUGCUGGUUACAUUGGGCUUGGGCGGCGGCGGCGUCU .((.((((((((((((.........)))).)))).)))).))...((((((((((((...((((.(((((((((((....))))))))(....).....))).)))).)))))))))))) (-44.91 = -45.03 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:52 2006