Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,154,326 – 11,154,431 |
Length | 105 |
Max. P | 0.728838 |
Location | 11,154,326 – 11,154,431 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 77.97 |
Mean single sequence MFE | -26.40 |
Consensus MFE | -17.35 |
Energy contribution | -16.47 |
Covariance contribution | -0.88 |
Combinations/Pair | 1.20 |
Mean z-score | -1.68 |
Structure conservation index | 0.66 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.728838 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11154326 105 + 27905053 UAAGAAUAAUAAUUGGAAGAGAGAUAAAGAUCUGCUCCCACGAUUAUCUUCAUAUCUGAUUUGGAGACUCGCCAAAAAGCUUGCGACAAAGCUCGCAGGCCGAGA .........((((((...(((((((....)))).)))...))))))((((((.........))))))((((.......((((((((......)))))))))))). ( -28.71) >DroSec_CAF1 11514 105 + 1 UAAGAAUAAUGAUUGGAAGGGAGAUAAAGAUCUGCUCCCACGAUUCUCUCCAUAUCUGAUUUGGAGACUCACCAAAAAGCUUGCGACAAAGCUUGCAAGCCGAGA ............((((..(((((.((......)))))))..((...((((((.........)))))).)).))))...((((((((......))))))))..... ( -29.40) >DroSim_CAF1 7224 105 + 1 UAAUAAUAAUGAUUGGAAGGGAGAUAAAGAUCUGCUCCCACGAUUCUCUCCAUAUCUGAUUUGGAGACUCGCCAAAAAGCUUGCGACAAAGCUUGCAGGCCGAGA ..........(((((...(((((.((......))))))).))))).((((((.........))))))((((((...((((((......))))))...)).)))). ( -31.50) >DroEre_CAF1 7253 81 + 1 ---------------------AGAUAAAGAUCUGCUCCCACGAUUAU--CCGUAUCUGAUGUGGAGACUCACCAA-AAGCUUACGACAAAGCUCGCGGGCUGAGC ---------------------((((....))))((((((((.((((.--.......))))))))...........-.((((..(((......)))..)))))))) ( -18.90) >DroYak_CAF1 7258 81 + 1 ---------------------UGAUAACGAUCGGCUCCCACGAUGGU--CCGUAUCUGAUUUGGAGACUCACCAA-AAGCUUGCGACAAAGCUCGCGGGCUGAGC ---------------------.(((....))).((((......((((--..((.(((.....))).))..)))).-.(((((((((......))))))))))))) ( -23.50) >consensus UAA_AAUAAU_AUUGGAAG_GAGAUAAAGAUCUGCUCCCACGAUUAUCUCCAUAUCUGAUUUGGAGACUCACCAAAAAGCUUGCGACAAAGCUCGCAGGCCGAGA .....................((((....)))).((((((.(((.........)))))....)))).((((.......((((((((......)))))))))))). (-17.35 = -16.47 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:51 2006