Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,154,006 – 11,154,110 |
Length | 104 |
Max. P | 0.573071 |
Location | 11,154,006 – 11,154,110 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 71.88 |
Mean single sequence MFE | -24.40 |
Consensus MFE | -14.61 |
Energy contribution | -16.35 |
Covariance contribution | 1.74 |
Combinations/Pair | 1.26 |
Mean z-score | -1.46 |
Structure conservation index | 0.60 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.573071 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11154006 104 + 27905053 AAACAACAUUGCGAAUUCGGUCAUACUGUGUUGUUUGGCAACGCGACCGCUGCAAUUUAAACUGCGACUUUAAACUUUGCUUUAGGUCCGAUUUAAAGUCGGUA .......((((((....(((((.....((((((.....))))))))))).))))))........((((((((((....((.....))....))))))))))... ( -27.30) >DroSec_CAF1 11214 81 + 1 AAACAACAUUGCGAAUUCGGUCAUACUGCGUUGUUUGGCAACGCGACCGCUGCAAUUUAAACUGCGACUUU-----------------------AAAGUCGCUA .......((((((....(((((.....((((((.....))))))))))).)))))).......((((((..-----------------------..)))))).. ( -27.10) >DroSim_CAF1 6924 81 + 1 AAACAACAUUGCGAAUUCGGUCAUACUGCGUUGUUUGGCAACGCGACCGCUGUAAUUUAAACUGCGACUUU-----------------------AAAGUCGCUA .......((((((....(((((.....((((((.....))))))))))).)))))).......((((((..-----------------------..)))))).. ( -25.10) >DroEre_CAF1 6926 103 + 1 AAG-AACUUCAUAAAUUCGGUCAUACUGCGUUGGUUGGCAACGCGAGCGCUGCAAUUUGAACUGCAACUUUAAGCCUUGAUUGAAAUGCUUUUUUAGGUCGGUA ...-............(((..(.....((((((.....))))))(((((...(((((......((........))...)))))...))))).....)..))).. ( -21.40) >DroYak_CAF1 6954 98 + 1 ACGGCACAUUGCGAAUUUGGUCCUACUGCGUUGGUUGGCAACGCGAGCGCUGCAAUUUAAA------CUUUAAACUUUGAUUAAAACCCGGCUUUAAGUCGGAU .......((((((.....((.....))(((((.((.(....))).))))))))))).....------....................(((((.....))))).. ( -21.10) >consensus AAACAACAUUGCGAAUUCGGUCAUACUGCGUUGUUUGGCAACGCGACCGCUGCAAUUUAAACUGCGACUUUAA_C_UUG_UU_A____C___UUAAAGUCGGUA .......((((((....(((((.....((((((.....))))))))))).))))))........((((((((((.................))))))))))... (-14.61 = -16.35 + 1.74)
Location | 11,154,006 – 11,154,110 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 71.88 |
Mean single sequence MFE | -24.00 |
Consensus MFE | -12.04 |
Energy contribution | -14.96 |
Covariance contribution | 2.92 |
Combinations/Pair | 1.19 |
Mean z-score | -1.65 |
Structure conservation index | 0.50 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.572147 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11154006 104 - 27905053 UACCGACUUUAAAUCGGACCUAAAGCAAAGUUUAAAGUCGCAGUUUAAAUUGCAGCGGUCGCGUUGCCAAACAACACAGUAUGACCGAAUUCGCAAUGUUGUUU ...(((((((((((..(........)...)))))))))))........(((((..((((((..(((..........)))..)))))).....)))))....... ( -24.20) >DroSec_CAF1 11214 81 - 1 UAGCGACUUU-----------------------AAAGUCGCAGUUUAAAUUGCAGCGGUCGCGUUGCCAAACAACGCAGUAUGACCGAAUUCGCAAUGUUGUUU ..((((((..-----------------------..)))))).......(((((..((((((..((((........))))..)))))).....)))))....... ( -27.50) >DroSim_CAF1 6924 81 - 1 UAGCGACUUU-----------------------AAAGUCGCAGUUUAAAUUACAGCGGUCGCGUUGCCAAACAACGCAGUAUGACCGAAUUCGCAAUGUUGUUU ..((((((..-----------------------..))))))..........((((((((((..((((........))))..)))))(....).....))))).. ( -24.50) >DroEre_CAF1 6926 103 - 1 UACCGACCUAAAAAAGCAUUUCAAUCAAGGCUUAAAGUUGCAGUUCAAAUUGCAGCGCUCGCGUUGCCAACCAACGCAGUAUGACCGAAUUUAUGAAGUU-CUU .............(((.((((((.....((.(((..((((((((....))))))))(((.((((((.....))))))))).))))).......)))))).-))) ( -24.60) >DroYak_CAF1 6954 98 - 1 AUCCGACUUAAAGCCGGGUUUUAAUCAAAGUUUAAAG------UUUAAAUUGCAGCGCUCGCGUUGCCAACCAACGCAGUAGGACCAAAUUCGCAAUGUGCCGU ....(((((.((((..(((....)))...)))).)))------))...(((((...(((.((((((.....))))))))).(((.....))))))))....... ( -19.20) >consensus UACCGACUUUAA___G____U_AA_CAA_G_UUAAAGUCGCAGUUUAAAUUGCAGCGGUCGCGUUGCCAAACAACGCAGUAUGACCGAAUUCGCAAUGUUGUUU ...(((((((((((...............)))))))))))........(((((..(((((((((((.....)))))).....))))).....)))))....... (-12.04 = -14.96 + 2.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:50 2006