Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,148,933 – 11,149,033 |
Length | 100 |
Max. P | 0.560749 |
Location | 11,148,933 – 11,149,033 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 95.17 |
Mean single sequence MFE | -29.45 |
Consensus MFE | -27.26 |
Energy contribution | -27.95 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.07 |
Mean z-score | -1.44 |
Structure conservation index | 0.93 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.560749 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11148933 100 + 27905053 CCCCUGUUAGUGCUAGUGCCAGCAGCGGCAGCAAGAAGGAGAAGCACAAAAAGUCCAAGGAGAAAUCCUCUGGGAAGGAUGAGAAGCGCCAACGGGAGGC ((((((((.(((((..((((......))))................((.....((((((((....)))).)))).....))...))))).)))))).)). ( -32.90) >DroSec_CAF1 1852 100 + 1 UCCCUGUUAGUGCUAGUGCCAGCAGCGGCAGCAAGAAGGAGAAACACAAAAAGUCCAAGGAUAAGUCCUCUGGGAAGGAUGAGAAGCGCCAACGGGAGGC ..((((((.(((((..((((......))))................((.....((((((((....)))).)))).....))...))))).)))))).... ( -28.60) >DroSim_CAF1 1848 100 + 1 CCCCUGUUAGUGCUAGUGCCAGCAGCGGCAGCAAGAAGGAGAAACACAAAAAGUCCAAGGAUAAGUCCUCUGGGAAGGAUGAGAAGCGCCAACGGGAGGC ((((((((.(((((..((((......))))................((.....((((((((....)))).)))).....))...))))).)))))).)). ( -30.40) >DroEre_CAF1 1846 100 + 1 CCCCUGUUAAUGCUAGUGCUAGCAGCGGCAGCAAGAAGGAGAAGCACAAAAAGUCCAAGGAGAAGUCCUCUGGGAAAGAUGAUAAGCGCCAACGGGAGAC ..((((((..(((((....)))))..(((.((.....(........)......((((((((....)))).))))...........))))))))))).... ( -25.90) >consensus CCCCUGUUAGUGCUAGUGCCAGCAGCGGCAGCAAGAAGGAGAAACACAAAAAGUCCAAGGAGAAGUCCUCUGGGAAGGAUGAGAAGCGCCAACGGGAGGC ((((((((.(((((..((((......))))................((.....((((((((....)))).)))).....))...))))).)))))).)). (-27.26 = -27.95 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:48 2006