Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,142,067 – 11,142,177 |
Length | 110 |
Max. P | 0.990859 |
Location | 11,142,067 – 11,142,177 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 76.54 |
Mean single sequence MFE | -41.04 |
Consensus MFE | -27.64 |
Energy contribution | -28.88 |
Covariance contribution | 1.24 |
Combinations/Pair | 1.30 |
Mean z-score | -2.34 |
Structure conservation index | 0.67 |
SVM decision value | 2.24 |
SVM RNA-class probability | 0.990859 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11142067 110 + 27905053 UUGGGUCUGGUCUUGGCCAUUGCCAUUGGCAUGGUAUUGAAGCGGUGCGACGGUAGCAGGGAAGAGGGGAAGGAAGAGGCGAUCAGCGAGCGGAGCGGACCAGGCCCAAA (((((((((((((...((.((((.((((((((.((......)).))))..)))).))))...................((.....))....))...))))))))))))). ( -40.50) >DroSec_CAF1 1768 110 + 1 UUGGGUCUGGUCUUGGCCAUUGCCAUUGGCGUGGCAUUGGAGCGGUGCGGCGGGAGCAGAGAAGAGAGGAAGGAAGAGACGAUCAGCGAGCGGAGCGGACCAGGCCCAAA (((((((((((((...(((.((((((....)))))).))).((..(((.((....))......((..(...........)..)).....)))..))))))))))))))). ( -46.30) >DroSim_CAF1 2138 110 + 1 UUGGGUCUGGUCUUGGCCAUUGCCAUUGGCUUGGUAAUGGAGCAGUGCGGCGGGAGCAGGGUAAAAGGGAAGGAAGAGACGAUCAGCGAGCGGAGCGGACCAGGCCCAAA (((((((((((((...(((((((((......))))))))).((..(((.((....))..................((.....)).....)))..))))))))))))))). ( -45.80) >DroEre_CAF1 1846 101 + 1 UCUGGUCUGGUCUGGGCCAUUGCCAUUGGCACGGCAUUGGAGUGGUGCGGAGGGAGGCGAGG--CG----AGG---AGGAACCCAGCGAGCGGAGUGGACCAGGCCCAAA ...(((((((((((..((.(((((.((.((((.((......)).)))).))....))))).(--(.----.((---.....))..))....))..))))))))))).... ( -43.10) >DroYak_CAF1 2251 86 + 1 -----ACUGGUCUGGGCCAUUGCCAUUGG-----UAUUGGAGUGGUGCGGAGAGAGG-------AG----CGG---AGGAGCCCAGCAAGCGGAGUGGACCGGGCCCAAA -----...(((((((.(((((.((.((.(-----((((.....))))).))....((-------.(----(..---....)))).......))))))).))))))).... ( -29.50) >consensus UUGGGUCUGGUCUUGGCCAUUGCCAUUGGCAUGGUAUUGGAGCGGUGCGGCGGGAGCAGAGAA_AG_GGAAGGAAGAGGCGAUCAGCGAGCGGAGCGGACCAGGCCCAAA (((((((((((((...((.((((.....((((.((......)).)))).............................((...)).))))..))...))))))))))))). (-27.64 = -28.88 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:46 2006