Locus 4083

Sequence ID 3R_DroMel_CAF1
Location 11,140,070 – 11,140,174
Length 104
Max. P 0.670958
window6543

overview

Window 3

Location 11,140,070 – 11,140,174
Length 104
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 80.81
Mean single sequence MFE -28.20
Consensus MFE -22.07
Energy contribution -22.74
Covariance contribution 0.67
Combinations/Pair 1.09
Mean z-score -1.54
Structure conservation index 0.78
SVM decision value 0.29
SVM RNA-class probability 0.670958
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11140070 104 - 27905053
ACGAAAAACACUCAAACUUUACAC----------------CAUGUGUACCAAGUUUAUGGAGUUAUUGAUUAGGAUUAGUGGCGCGCUGUUCUGGCAGGCGUUUCUAUCUUUUGAUCUUU
.........(((((((((((((((----------------...)))))..))))))...))))....((((((((.(((..((((.((((....))))))))..)))..))))))))... ( -27.20)
>DroSim_CAF1 157 104 - 1
ACGAAAAACACUCAAACUUUACAC----------------CAUGUGUGCCAAGUUUAUGGAGUUAUUGAUUAGGAUUAGUGGCGCGCUGUUCUGGCAGGCGUUUCUAUCUUUUGAUCUUU
.........(((((((((((((((----------------...)))))..))))))...))))....((((((((.(((..((((.((((....))))))))..)))..))))))))... ( -26.90)
>DroYak_CAF1 137 113 - 1
CAAAAAAACACUCAAACUUCACAGUACAUAUGUACAUACAUAUGUGUGCCAAGUUUAUGGAGCU-UUGAUCGGGAUUAGUGGCGCGCUGUUCUGGCAGGCGUUUCUA------GAUCUUU
..........(((((((((..((.(((((((((....)))))))))))..))))))...)))..-......((((((((..((((.((((....))))))))..)).------)))))). ( -30.50)
>consensus
ACGAAAAACACUCAAACUUUACAC________________CAUGUGUGCCAAGUUUAUGGAGUUAUUGAUUAGGAUUAGUGGCGCGCUGUUCUGGCAGGCGUUUCUAUCUUUUGAUCUUU
..........((((((((((((((...................)))))..))))))...))).....(((((((..(((..((((.((((....))))))))..)))...)))))))... (-22.07 = -22.74 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:45 2006