Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,120,315 – 11,120,414 |
Length | 99 |
Max. P | 0.820315 |
Location | 11,120,315 – 11,120,414 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 91.86 |
Mean single sequence MFE | -21.68 |
Consensus MFE | -18.50 |
Energy contribution | -18.90 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.47 |
Structure conservation index | 0.85 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.820315 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11120315 99 - 27905053 CCCAA-AAACGCCCUUAAGCGAAGGAA-----UGAUUGCGUGUUGCUUUGCUGGCUAAAUGCAAUCGAUACUCGCCAUCAAAGUUAAACAAAAGUUCAACAACAC .....-............((((.(...-----(((((((((...(((.....)))...)))))))))...))))).......(((.(((....))).)))..... ( -22.10) >DroSec_CAF1 30783 104 - 1 CCAAA-AAACGCCCUAAAGCACAGGAAUCAAAUGAUUGCGUGUUGCUUUGCUGGCCAAGUGUAAUCGAUACUCGCCAUCAAAGUUAAACAAAAGUUCAACAACAC .....-.(((.......(((((.(.((((....)))).))))))((((((.((((..(((((.....))))).)))).)))))).........)))......... ( -23.10) >DroSim_CAF1 29928 104 - 1 CCCCU-AAACGCCCUAAAGCACAGGAAUGAAAUGAUUGCGUGUUGCUUUGCUGGCCAAGUGUAAUCGAUACUCGCCAUCAAAGUUAAACAAAAGUUCAACAACAC ..(((-....((......))..))).......(((.....((((((((((.((((..(((((.....))))).)))).))))))..)))).....)))....... ( -21.40) >DroEre_CAF1 31247 104 - 1 CCCAA-AGACGCCCUAAAGCACCGAUAUGAAAUGAUUGCGUGUUGCUUUGCUGGCCAAGUGUAAUCGAUACUCGCCAUCAAAGUUAAACAAAAGUUCAACAACAC .....-.(((.......(((((((((........)))).)))))((((((.((((..(((((.....))))).)))).)))))).........)))......... ( -21.60) >DroYak_CAF1 31735 105 - 1 CCCAAAAAACGCCCUAAAGCACCGGAAUGAAAUGAUUGCGUGUUGCUUUGCUGGCCAAGUGUAAUCAAUACUCGCCAUCAAAGUUAAACAAAAGUUCAACAACAC ..........((......))............(((.....((((((((((.((((..(((((.....))))).)))).))))))..)))).....)))....... ( -20.20) >consensus CCCAA_AAACGCCCUAAAGCACAGGAAUGAAAUGAUUGCGUGUUGCUUUGCUGGCCAAGUGUAAUCGAUACUCGCCAUCAAAGUUAAACAAAAGUUCAACAACAC ..........((......))............(((.....((((((((((.((((..(((((.....))))).)))).))))))..)))).....)))....... (-18.50 = -18.90 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:39 2006