Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,521,269 – 1,521,393 |
Length | 124 |
Max. P | 0.999544 |
Location | 1,521,269 – 1,521,362 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 74.85 |
Mean single sequence MFE | -26.70 |
Consensus MFE | -16.55 |
Energy contribution | -16.67 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.06 |
Mean z-score | -1.81 |
Structure conservation index | 0.62 |
SVM decision value | 1.04 |
SVM RNA-class probability | 0.904386 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1521269 93 + 27905053 UAU----------ACCAGAAAG-------------AACAGAUUGCAAGAAGUAAGAAGUAAGUCGUCUGCAAUCUUUAAAGCAGUAGACUGCUUGUUAGUGCAGUGGAUUUCUGCG ...----------..((((((.-------------.((((((((((.((..((.....))..))...))))))))...((((((....)))))).........))...)))))).. ( -24.30) >DroSec_CAF1 23216 110 + 1 UAUCUUUCCGCGCGCUAGAAAGU-AACGUUUAUUGAAAGGAUAGCAAGAA-----AAGUAGCUCGUCUGCAAUCUUUAAAGCAGUAUACUGCUUGUUAUUGCAGUGGAUUUCUGCU ......(((((..((.....(((-(((.........((((((.(((.((.-----.((...))..))))).)))))).((((((....)))))))))))))).)))))........ ( -27.10) >DroSim_CAF1 21388 111 + 1 UAUCUUUCCGCGCGCUAGAAAGUCAAAAUUUAUUGAAAGGAUAGCAAGAA-----AAGUAGCUCGUCUGCAAUCUUUAAAGCAGUAUACUGCUUGUUAUUGCAGUGGAACUAUACU .....((((((..((((.....((((......)))).....)))).....-----............((((((.....((((((....))))))...))))))))))))....... ( -28.70) >consensus UAUCUUUCCGCGCGCUAGAAAGU_AA__UUUAUUGAAAGGAUAGCAAGAA_____AAGUAGCUCGUCUGCAAUCUUUAAAGCAGUAUACUGCUUGUUAUUGCAGUGGAUUUCUGCU .........................................................(((..((..(((((((.....((((((....))))))...)))))))..))....))). (-16.55 = -16.67 + 0.11)
Location | 1,521,269 – 1,521,362 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 74.85 |
Mean single sequence MFE | -26.97 |
Consensus MFE | -15.71 |
Energy contribution | -16.05 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.13 |
Mean z-score | -3.12 |
Structure conservation index | 0.58 |
SVM decision value | 3.71 |
SVM RNA-class probability | 0.999544 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1521269 93 - 27905053 CGCAGAAAUCCACUGCACUAACAAGCAGUCUACUGCUUUAAAGAUUGCAGACGACUUACUUCUUACUUCUUGCAAUCUGUU-------------CUUUCUGGU----------AUA .((((.......))))((((..((((((....))))))...((((((((((.(............).)).))))))))...-------------.....))))----------... ( -21.80) >DroSec_CAF1 23216 110 - 1 AGCAGAAAUCCACUGCAAUAACAAGCAGUAUACUGCUUUAAAGAUUGCAGACGAGCUACUU-----UUCUUGCUAUCCUUUCAAUAAACGUU-ACUUUCUAGCGCGCGGAAAGAUA (((((.......(((((((...((((((....)))))).....)))))))..(((......-----))))))))...(((((......((((-(.....)))))....)))))... ( -26.80) >DroSim_CAF1 21388 111 - 1 AGUAUAGUUCCACUGCAAUAACAAGCAGUAUACUGCUUUAAAGAUUGCAGACGAGCUACUU-----UUCUUGCUAUCCUUUCAAUAAAUUUUGACUUUCUAGCGCGCGGAAAGAUA ....((((((..(((((((...((((((....)))))).....)))))))..))))))(((-----(((.(((((.....((((......)))).....)))))...))))))... ( -32.30) >consensus AGCAGAAAUCCACUGCAAUAACAAGCAGUAUACUGCUUUAAAGAUUGCAGACGAGCUACUU_____UUCUUGCUAUCCUUUCAAUAAA__UU_ACUUUCUAGCGCGCGGAAAGAUA .((((((.....(((((((...((((((....)))))).....))))))).((((.............))))........................)))).))............. (-15.71 = -16.05 + 0.34)
Location | 1,521,282 – 1,521,393 |
---|---|
Length | 111 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.25 |
Mean single sequence MFE | -30.23 |
Consensus MFE | -19.97 |
Energy contribution | -21.17 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.04 |
Mean z-score | -2.02 |
Structure conservation index | 0.66 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.711375 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1521282 111 + 27905053 ACAGAUUGCAAGAAGUAAGAAGUAAGUCGUCUGCAAUCUUUAAAGCAGUAGACUGCUUGUUAGUGCAGUGGAUUUCUGCGUGAAAAGUGC---UU------CUGCAUCUCUCUCGCACUU ..((((((((.((..((.....))..))...))))))))...((((((....))))))...(((((.(..(....)..)(.((.(..(((---..------..)))..).)).)))))). ( -31.70) >DroSec_CAF1 23251 115 + 1 AAGGAUAGCAAGAA-----AAGUAGCUCGUCUGCAAUCUUUAAAGCAGUAUACUGCUUGUUAUUGCAGUGGAUUUCUGCUUGAAAAAUUCAGCUUGCAUAGCUUCAUCUCUCUCGCACUU .......((.(((.-----((((((.((..(((((((.....((((((....))))))...)))))))..))...)))))).........((((.....)))).......))).)).... ( -29.20) >DroSim_CAF1 21424 115 + 1 AAGGAUAGCAAGAA-----AAGUAGCUCGUCUGCAAUCUUUAAAGCAGUAUACUGCUUGUUAUUGCAGUGGAACUAUACUUGAAAAAUCCUGCUUGUAUAGCUUCUUCUCUCUCGCACUU .(((((..((((..-----..((((.((..(((((((.....((((((....))))))...)))))))..)).)))).))))....)))))(((.....))).................. ( -29.80) >consensus AAGGAUAGCAAGAA_____AAGUAGCUCGUCUGCAAUCUUUAAAGCAGUAUACUGCUUGUUAUUGCAGUGGAUUUCUGCUUGAAAAAUCC_GCUUG_AUAGCUUCAUCUCUCUCGCACUU .......((.(((......(((((..((..(((((((.....((((((....))))))...)))))))..))....)))))..........(((.....)))........))).)).... (-19.97 = -21.17 + 1.20)
Location | 1,521,282 – 1,521,393 |
---|---|
Length | 111 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.25 |
Mean single sequence MFE | -32.30 |
Consensus MFE | -23.28 |
Energy contribution | -24.37 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.00 |
Mean z-score | -3.03 |
Structure conservation index | 0.72 |
SVM decision value | 2.05 |
SVM RNA-class probability | 0.986624 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1521282 111 - 27905053 AAGUGCGAGAGAGAUGCAG------AA---GCACUUUUCACGCAGAAAUCCACUGCACUAACAAGCAGUCUACUGCUUUAAAGAUUGCAGACGACUUACUUCUUACUUCUUGCAAUCUGU ...((((.(((((.(((..------..---))).))))).))))..................((((((....))))))...((((((((((.(............).)).)))))))).. ( -28.00) >DroSec_CAF1 23251 115 - 1 AAGUGCGAGAGAGAUGAAGCUAUGCAAGCUGAAUUUUUCAAGCAGAAAUCCACUGCAAUAACAAGCAGUAUACUGCUUUAAAGAUUGCAGACGAGCUACUU-----UUCUUGCUAUCCUU ....(((((((((..(.((((.......((((((((((.((((((......(((((........)))))...)))))).))))))).)))...)))).)))-----)))))))....... ( -33.00) >DroSim_CAF1 21424 115 - 1 AAGUGCGAGAGAGAAGAAGCUAUACAAGCAGGAUUUUUCAAGUAUAGUUCCACUGCAAUAACAAGCAGUAUACUGCUUUAAAGAUUGCAGACGAGCUACUU-----UUCUUGCUAUCCUU ....(((((((((((((((((.....)))....)))))).....((((((..(((((((...((((((....)))))).....)))))))..))))))..)-----)))))))....... ( -35.90) >consensus AAGUGCGAGAGAGAUGAAGCUAU_CAAGC_GAAUUUUUCAAGCAGAAAUCCACUGCAAUAACAAGCAGUAUACUGCUUUAAAGAUUGCAGACGAGCUACUU_____UUCUUGCUAUCCUU ....((((((((((....(((.....)))......)))).............(((((((...((((((....)))))).....))))))).................))))))....... (-23.28 = -24.37 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:28 2006